How to create edge list from spark data frame in Pyspark?

问题

I am using graphframes in pyspark for some graph type of analytics and wondering what would be the best way to create the edge list data frame from a vertices data frame.

For example, below is my vertices data frame. I have a list of ids and they belong to different groups.

+---+-----+
|id |group|
+---+-----+
|a  |1    |
|b  |2    |
|c  |1    |
|d  |2    |
|e  |3    |
|a  |3    |
|f  |1    |
+---+-----+

My objective is to create an edge list data frame to indicate ids which appear in common groups. Please note that 1 id could appear in multiple groups (e.g. id a above is in group 1 and 3). Below is the edge list data frame that I'd like to get:

+---+-----+-----+
|src|dst  |group|
+---+-----+-----+
|a  |c    |1    |
|a  |f    |1    |
|c  |f    |1    |
|b  |d    |2    |
|a  |e    |3    |
+---+-----+-----+

Thanks in advance!

回答1:

Edit 1

Not sure if it's the better way to solve, but I did a workaround:

import pyspark.sql.functions as f

df = df.withColumn('match', f.collect_set('id').over(Window.partitionBy('group')))

df = df.select(f.col('id').alias('src'),
               f.explode('match').alias('dst'),
               f.col('group'))

df = df.withColumn('duplicate_edges', f.array_sort(f.array('src', 'dst')))
df = (df
      .where(f.col('src') != f.col('dst'))
      .drop_duplicates(subset=['duplicate_edges'])
      .drop('duplicate_edges'))

df.sort('group', 'src', 'dst').show()

Output

+---+---+-----+
|src|dst|group|
+---+---+-----+
|  a|  c|    1|
|  a|  f|    1|
|  c|  f|    1|
|  b|  d|    2|
|  e|  a|    3|
+---+---+-----+

Original answer

Try this:

import pyspark.sql.functions as f

df = (df
      .groupby('group')
      .agg(f.first('id').alias('src'),
           f.last('id').alias('dst')))

df.show()

Output:

+-----+---+---+
|group|src|dst|
+-----+---+---+
|    1|  a|  c|
|    3|  e|  a|
|    2|  b|  d|
+-----+---+---+

回答2:

You can do a self join:

df = df.toDF('src', 'group')
df2 = df.toDF('dst', 'group2')

result = df.join(
    df2,
    (df.group == df2.group2) & (df.src < df2.dst)
).select('src', 'dst', 'group').distinct().orderBy('group', 'src', 'dst')

result.show()
+---+---+-----+
|src|dst|group|
+---+---+-----+
|  a|  c|    1|
|  a|  f|    1|
|  c|  f|    1|
|  b|  d|    2|
|  a|  e|    3|
+---+---+-----+

来源：https://stackoverflow.com/questions/65483515/how-to-create-edge-list-from-spark-data-frame-in-pyspark

标签

python

apache-spark

pyspark

apache-spark-sql

graphframes