Setting Heat Map Color range as per given Sequence in hcharter

问题

Here I am trying to create a heat map using highcharter::hcharter() where less than -1 should be one color (pink), -1 to 1 should be transparent or white color, and greater than +1 should be another color (violet).

Presently I have written code using hchart() and used color_stops to change the color format. But this works really well when data is centered to 0, but when it isn't centered to 0 let say from -5 to +7.5 white/transparent color would be shifted to 1 as shown in the image below.

a1 <- rnorm(30,0,2)  
a2 <- rnorm(30,0,2)  
a3 <- rnorm(30,0,2)  
a4 <- rnorm(30,0,2)  
a <- cbind(a1,a2,a3,a4)
heatmap_matrix <- as.matrix(a)

library(highcharter) 
hchart(heatmap_matrix) %>%  
  hc_colorAxis(stops = color_stops(n = 3, colors = c("#FF1493", "white", "#800080")))

For data range between -5 to +7.5
-5 to -1 should show pink gradient color
-1 to +1 should show white color
+1 to 7.5 should show violet gradient color

回答1:

The argument stops in hc_colorAxis() requires a list that defines the minimum value as 0 and the maximum value as 1. You can set a number within 0 ~ 1 to represent the position of a certain value and set its color.

Find where the zero is located

foo+bar

p <- (0 - min(heatmap_matrix)) / (max(heatmap_matrix) - min(heatmap_matrix))

Set a custom list

stops <- data.frame(q = c(0, p, 1),
                    c = c("#FF1493", "#FFFFFF", "#800080"),
                    stringsAsFactors = FALSE)
#          q       c
# 1 0.000000 #FF1493
# 2 0.434873 #FFFFFF
# 3 1.000000 #800080

stops <- list_parse2(stops)

Control arguments

hchart(heatmap_matrix) %>%  
  hc_colorAxis(stops = stops, startOnTick = F, endOnTick = F)

来源：https://stackoverflow.com/questions/54143215/setting-heat-map-color-range-as-per-given-sequence-in-hcharter

标签

heatmap

r-highcharter