Contour plot is not been filled completely using ggplot

问题

I'm trying to do my first ever filled contour plot using ggplot. With my data, I was specting something like:

But my result was:

a <- c(1, 1.1, 1, 1.3, 1.2, 2, 2.2, 2, 2.5, 2.1, 3, 3, 3, 3.1, 3.2)
b <- c(rep(c(0, 5, 10, 15, 20), 3))
c <- seq(0, 1000, by = 1000/14)

DF <- data.frame(a, b, c)

ggplot(DF, aes(x = a, y = b, z = c)) +
  geom_raster(aes(fill = c)) +
  geom_contour() + scale_fill_gradientn(colours = rainbow(10))

What I'm doing wrong, and where I can find more datailed information about this plots?

回答1:

Here is an example:

generate coordinates:

b = c(0, 5, 10, 15, 20)
a = (1:30)/10

generate all combinations of coordinates

df <- expand.grid(a, b)

generate c via tcrossprod of a and b+1 (this is completely arbitrary but will generate a nice pattern)

df$c <- as.vector(a %o% (b+1))

ggplot(df, aes(x = Var1, y = Var2, z = c, fill = c)) +
  geom_raster(interpolate = T) + #interpolate for success 
  scale_fill_gradientn(colours = rainbow(10))

generally if you have a matrix of values (z values) to be plotted in ggplot you will need to convert it to long format via melt in reshape2 or gather in tidyr and then use for plotting.

Your data is very sparse, one approach to overcome this is to generate the missing data. I will show how to accomplish with loess function:

model <- loess(c ~ a + b, data = DF) #make a loess model based on the data provided (data in OP)

z <- predict(model, newdata = expand.grid(a = (10:30)/10, b = (0:200)/10)) #predict on the grid data

df <- data.frame(expand.grid(a = (10:30)/10, b = (0:200)/10), c = as.vector(z)) #append z to grid data

ggplot(df, aes(x = a, y = b, z = c, fill = c)) +
  geom_raster(interpolate = T)+
  scale_fill_gradientn(colours = rainbow(10))

来源：https://stackoverflow.com/questions/47620012/contour-plot-is-not-been-filled-completely-using-ggplot

标签

plot

ggplot2

contour