问题
This is a follow-up question of this question: How to set .libPaths (checkpoint) on workers when running parallel computation in R
Based on the answer I put the following code (simplified example) into an R package called 'test1':
#' @export
f <- function() {
`%dopar%` <- foreach::`%dopar%`
doFuture::registerDoFuture()
libs <- .libPaths()
res <- foreach::foreach(x = 1:2) %dopar% {
cat(sprintf("Initial Library paths used by worker (PID %d):\n", Sys.getpid()))
cat(sprintf(" - %s\n", sQuote(.libPaths()[1])))
## Use the same library paths as the master R session
.libPaths(libs)
cat(sprintf("Library paths used by worker (PID %d):\n", Sys.getpid()))
cat(sprintf(" - %s\n", sQuote(.libPaths()[1])))
x + g()
}
res
}
g <- function() {
h()
}
h <- function() {
runif(1)
}
Then I called checkpoint::checkpoint("2018-07-24")
and installed the package into the checkpoint library. The following code then produced this error:
checkpoint::checkpoint("2018-07-24")
future::plan("multisession")
test1::f()
Initial Library paths used by worker (PID 16880): - 'C:/Programme/R-3.5.1/library'
Library paths used by worker (PID 16880): - '.../.checkpoint/2018-07-24/lib/x86_64-w64-mingw32/3.5.1'
Initial Library paths used by worker (PID 3916): - 'C:/Programme/R-3.5.1/library'
Library paths used by worker (PID 3916): - '.../.checkpoint/2018-07-24/lib/x86_64-w64-mingw32/3.5.1'
Error in { : task 1 failed - "could not find function "h""
When I explicitly call test1:::g()
inside the foreach
call, it works though. Can someone explain, why I have to explicitly call a function of my own package inside a foreach loop with :::
? It looks like g()
seems to be found, but h()
then not?
来源:https://stackoverflow.com/questions/53117396/internal-function-of-r-package-not-found-when-using-foreach-with-checkpoint