Sources on S4 objects, methods and programming in R

谁说胖子不能爱 提交于 2019-11-26 18:44:48

问题


As I'm often confronted with situations where S4 programming is needed to keep an overview, I've collected quite some sources on S4 objects, methods and programming. I've listed them here as a reference. Please add your own sources as well.

On the web

  • The methods help files : help files from the package methods, where much of the necessary information can be found
  • S4 classes in 15 pages : Short introduction on the programming with S4 objects.
  • How S4 methods work : more explanation about the underlying mechanisms.
  • Not so short introduction to S4 : with practical examples of how to construct the classes and some useful tips. It contains a handy overview as appendix, but contains errors as well. Care should be taken using this one.
  • OOP in R : handout notes with practical examples on S3 and S4
  • S4 Objects : presentation by Thomas Lumley about S4 objects.
  • R object oriented programming : in-depth introduction to object oriented programming in R. It covers S3, S4 and S4 reference classes. The accompanying sequences package implements the class system used throughout the slides.

Books

  • Software for Data Analysis-Programming with R (J. Chambers) : A classic, although not reviewed positive everywhere, that contains a large section on S4
  • R programming for Bioinformatics (R. Gentleman) : specifically directed towards working with Bioconductor, which is completely based on S4. But it gives a broad overview and is useful for many other people too.

PS : if somebody finds the community checkbox, you can make this a community-owned post. Somehow I can't find it in the edit window any more...


回答1:


My write up of S4 (still in progress) is available here: http://adv-r.had.co.nz/S4.html




回答2:


R for programmers (Matloff) (free) and Introduction to scientific programming and simulation (Jones) have a short section on "new-style" S4 classes.




回答3:


Another good book by John Chambers: "Programming with Data: A Guide to the S Language". As the name suggests it is actually about S, not R, but it provides a lot of valuable information about S4 classes anyway.

There's also some information in the R manuals "Writing R Extensions" and "R Internals" (particularly the latter). Those can be found at http://cran.r-project.org/doc/manuals/.

Finally, I would recommend "How S4 Methods Work", which is a great overview of how to think about S4 as it fits into R.



来源:https://stackoverflow.com/questions/4143611/sources-on-s4-objects-methods-and-programming-in-r

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