markov

Steady State Probabilities (Markov Chain) Python Implementation

↘锁芯ラ 提交于 2021-01-27 21:18:31
问题 Hi I am trying to generate steady state probabilities for a transition probability matrix. Here is the code I am using: import numpy as np one_step_transition = array([[0.125 , 0.42857143, 0.75 ], [0.75 , 0.14285714, 0.25 ], [0.125 , 0.42857143, 0. ]]) def steady_state_prop(p): dim = p.shape[0] q = (p-np.eye(dim)) ones = np.ones(dim) q = np.c_[q,ones] QTQ = np.dot(q, q.T) bQT = np.ones(dim) return np.linalg.solve(QTQ,bQT) steady_state_matrix = steady_state_prop(one_step_transition.transpose()

Markov Chains, random text based on probability. Java

為{幸葍}努か 提交于 2020-02-03 08:26:26
问题 I'm trying to generate a string of 140 Characters based on probabilities of repetition from an input text. I already have an array with each valid character and in a different array probability of each char. char[] array = [a, b, c, ...] double[] array2 = [.1, .3, .4, ...] I already read that I need to generate a random double from 0-1, but I don't get how to relate it to my arrays and generate a 140 char String. Just need help with that method, at least the explanation on how to do it.

Markov Chains, random text based on probability. Java

我们两清 提交于 2020-02-03 08:26:12
问题 I'm trying to generate a string of 140 Characters based on probabilities of repetition from an input text. I already have an array with each valid character and in a different array probability of each char. char[] array = [a, b, c, ...] double[] array2 = [.1, .3, .4, ...] I already read that I need to generate a random double from 0-1, but I don't get how to relate it to my arrays and generate a 140 char String. Just need help with that method, at least the explanation on how to do it.

Markov Chains, random text based on probability. Java

…衆ロ難τιáo~ 提交于 2020-02-03 08:25:32
问题 I'm trying to generate a string of 140 Characters based on probabilities of repetition from an input text. I already have an array with each valid character and in a different array probability of each char. char[] array = [a, b, c, ...] double[] array2 = [.1, .3, .4, ...] I already read that I need to generate a random double from 0-1, but I don't get how to relate it to my arrays and generate a 140 char String. Just need help with that method, at least the explanation on how to do it.

R markov chain package, is possible to set the coordinates and size of the nodes?

你。 提交于 2020-01-14 14:38:27
问题 I'm working with R in some biology-behavioural problems, and I have a transition matrix which I want to plot in a certain way. I'm using the markovchain package, which makes easy the visualization. This is a test-code and it's output. > a<-array(0.25,dim = c(4,4)) > markov<-new("markovchain",transitionMatrix=a,states=c("a","b","c","d"), name="test") > markov test A 4 - dimensional discrete Markov Chain defined by the following states: a, b, c, d The transition matrix (by rows) is defined as

Is there an elegant and efficient way to implement weighted random choices in golang? Details on current implementation and issues inside

扶醉桌前 提交于 2020-01-01 17:08:14
问题 tl;dr: I'm looking for methods to implement a weighted random choice based on the relative magnitude of values (or functions of values) in an array in golang. Are there standard algorithms or recommendable packages for this? Is so how do they scale? Goals I'm trying to write 2D and 3D markov process programs in golang. A simple 2D example of such is the following: Imagine one has a lattice, and on each site labeled by index (i,j) there are n(i,j) particles. At each time step, the program

Multi state models in R2BayesX

折月煮酒 提交于 2019-12-27 05:09:09
问题 I am trying to fit a multi-state model using R package R2BayesX. How can I do so correctly? There is no example in the manual. Here is my attempt. activity is 1/0 ie the states time is time patient id is the random effect I want f <- activity ~ sx(time,bs="baseline")+sx(PatientId, bs="re") b <- bayesx(f, family = "multistate", method = "MCMC", data=df) Note: created new output directory Warning message: In run.bayesx(file.path(res$bayesx.prg$file.dir, prg.name = res$bayesx.prg$prg.name), : an

Multi state models in R2BayesX

谁说我不能喝 提交于 2019-12-27 05:08:43
问题 I am trying to fit a multi-state model using R package R2BayesX. How can I do so correctly? There is no example in the manual. Here is my attempt. activity is 1/0 ie the states time is time patient id is the random effect I want f <- activity ~ sx(time,bs="baseline")+sx(PatientId, bs="re") b <- bayesx(f, family = "multistate", method = "MCMC", data=df) Note: created new output directory Warning message: In run.bayesx(file.path(res$bayesx.prg$file.dir, prg.name = res$bayesx.prg$prg.name), : an

Markov Transition Probability Matrix Implementation in Python

江枫思渺然 提交于 2019-12-24 00:27:44
问题 I am trying to calculate one-step, two-step transition probability matrices for a sequence as shown below : sample = [1,1,2,2,1,3,2,1,2,3,1,2,3,1,2,3,1,2,1,2] import numpy as np def onestep_transition_matrix(transitions): n = 3 #number of states M = [[0]*n for _ in range(n)] for (i,j) in zip(transitions,transitions[1:]): M[i-1][j-1] += 1 #now convert to probabilities: for row in M: s = sum(row) if s > 0: row[:] = [f/s for f in row] return M one_step_array = np.array(onestep_transition_matrix