imagej

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I have some experience with R as a statistics platform, but am inexperienced in image based maths. I have a series of photographs (tiff format, px/µm is known) with holes and irregular curves. I'd like to measure the shortest distance between a hole and the closest curve for that particular hole. I'd like to do this for each hole in a photograph. The holes are not regular either, so maybe I'd need to tell the program what are holes and what are curves (ImageJ has a point and segmented line functions). Any ideas how to do this? Which package should I use in R? Would you recommend another

In a regular Java application, I have a BufferedImage that I would like to manipulate with ImageJ. I have a macro that is exactly what I need to execute. I suspect that the first step is to make an ImagePlus object, but I am not sure how to then run a macro on the ImagePlus object from within Java. Section 7.3 of the ImageJ tutorial found here says: If you decide to use ImagePlus as your internal image format you can also use all plugins and macros from the ImageJ distribution as well as all other ImageJ plugins. But does not indicate how to do so. If someone could explain how, or point me

可以将文章内容翻译成中文,广告屏蔽插件可能会导致该功能失效(如失效，请关闭广告屏蔽插件后再试): 问题: I use the ImageJ as my default image viewer program. In order to view .nii format images, I installed the Nifti_io plugin following the instructions in here ! However, when I try to open an image from terminal, it just says File is not in a supported format, a reader plugin si not available, or it was not found. /tmp/TempFile-2805.nii If I try to open the image just by clicking in ImageJ Plugins>Nifti Reader>/[imageURL] it opens it correctly, but I would like to open it directly from terminal. Thank you very much. 回答1: It looks like the

可以将文章内容翻译成中文,广告屏蔽插件可能会导致该功能失效(如失效，请关闭广告屏蔽插件后再试): 问题: I am using Python to design a software, and the image processing is one of the steps. I am using ImageJ to realize this. Since there is a Jython interpreter within ImageJ, which can be opened within ImageJ software, there must be a way to connect ImageJ to Python and call all the functions within Python. I wonder how I can do that to finish all the processing in Python rather than open the interpreter in ImageJ? 回答1: I wonder how I can do that to finish all the processing in Python rather than open the interpreter in ImageJ? You can write a

I am trying to count the number of hairs transplanted in the following image. So practically, I have to count the number of spots I can find in the center of image. (I've uploaded the inverted image of a bald scalp on which new hairs have been transplanted because the original image is bloody and absolutely disgusting! To see the original non-inverted image click here . To see the larger version of the inverted image just click on it). Is there any known image processing algorithm to detect these spots? I've found out that the Circle Hough Transform algorithm can be used to find circles in an

I use the ImageJ as my default image viewer program. In order to view .nii format images, I installed the Nifti_io plugin following the instructions in here ! However, when I try to open an image from terminal, it just says File is not in a supported format, a reader plugin si not available, or it was not found. /tmp/TempFile-2805.nii If I try to open the image just by clicking in ImageJ Plugins>Nifti Reader>/[imageURL] it opens it correctly, but I would like to open it directly from terminal. Thank you very much. It looks like the Nifti_io plugin adds commands for importing but doesn't use