circos | 易学教程

error installing libgd in mac 10.9

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问题 I'm trying to install libgd on my mac OSX 10.9 following the instructions here (https://mikewest.org/2007/04/installing-libgd-from-source-on-os-x) and peaking on some more info here (Installing GD library for perl on MacOSX 10.6). the main goal is to be able to install and use Circos. i followed all the steps to install the various libraries libpgn, pibjpeg and freetype using mainly ./configure && make && make sudo install ...however 1) the ./congigure command from libgd does not find the

Circos plot issue with genes and patient mutation frequency

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问题 I have already asked this question in the bioinformatics section but i see here there are more circos related query so i would like to post my question here again question There are R packages which i haven't tried as the original circos was bit easier on my side to make the data format and run it but im not getting the plot as i would like to given that its generating but looks pretty dumb sort of difficult to infer . So i have one set of file which contain gene and their chromosome location

Adjust highlight.sector() width and placement - Chord diagram (circlize package) in R

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问题 I need some help with adjusting highlighted sectors of a chordDiagram() from the circlize package. I am working with fisheries landings data. Fishing vessels start their trip in one port (homeport PORT_DE ), and land their catch in another port (landing port PORT_LA ). I am working with scallops live weight in tonnes (landings SCALLOP_W ). Here is a simple example of the dataframe: PORT_DE PORT_LA SCALLOP_W 1 Aberdeen Aberdeen 116 2 Barrow Barrow 98 3 Douglas Barrow 127 4 Kirkcudbright Barrow

Network chord diagram woes in R

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I have some data similar to the data.frame d as follows. d <- structure(list(ID = c("KP1009", "GP3040", "KP1757", "GP2243", "KP682", "KP1789", "KP1933", "KP1662", "KP1718", "GP3339", "GP4007", "GP3398", "GP6720", "KP808", "KP1154", "KP748", "GP4263", "GP1132", "GP5881", "GP6291", "KP1004", "KP1998", "GP4123", "GP5930", "KP1070", "KP905", "KP579", "KP1100", "KP587", "GP913", "GP4864", "KP1513", "GP5979", "KP730", "KP1412", "KP615", "KP1315", "KP993", "GP1521", "KP1034", "KP651", "GP2876", "GP4715", "GP5056", "GP555", "GP408", "GP4217", "GP641"), Type = c("B", "A", "B", "A", "B", "B", "B", "B",