How to set same scales across different facets with ggpairs()

问题

I have the following dataset and codes to construct the 2d density contour plot for each pair of variables in the data frame. My question is whether there is a way in ggpairs() to make sure that the scales are the same for different pairs of variables like the same scale for different facets in ggplot2. For example, I would like the x scale and y scale are all from [-1, 1] for each of the picture.

Thanks in advance!

The plot looks like

library(GGally)
ggpairs(df,upper = list(continuous = "density"),
     lower = list(combo = "facetdensity"))

#the dataset looks like 
print(df)
         x           y           z             w
1   0.49916998 -0.07439680  0.37731097  0.0927331640
2   0.25281542 -1.35130718  1.02680343  0.8462638556
3   0.50950876 -0.22157249 -0.71134553 -0.6137126948
4   0.28740609 -0.17460743 -0.62504812 -0.7658094835
5   0.28220492 -0.47080289 -0.33799637 -0.7032576540
6  -0.06108038 -0.49756810  0.49099505  0.5606988283
7   0.29427440 -1.14998030  0.89409384  0.5656682378
8  -0.37378096 -1.37798177  1.22424964  1.0976507702
9   0.24306941 -0.41519951  0.17502049 -0.1261603208
10  0.45686871 -0.08291032  0.75929106  0.7457002259
11 -0.16567173 -1.16855088  0.59439600  0.6410396945
12  0.22274809 -0.19632766  0.27193362  0.5532901113
13  1.25555629  0.24633499 -0.39836999 -0.5945792966
14  1.30440121  0.05595755  1.04363679  0.7379212885
15 -0.53739075 -0.01977930  0.22634275  0.4699563173
16  0.17740551 -0.56039760 -0.03278126 -0.0002523205
17  1.02873716  0.05929581 -0.74931661 -0.8830775310
18 -0.13417946 -0.60421101 -0.24532606 -0.1951831558
19  0.11552305 -0.14462104  0.28545703 -0.2527437818
20  0.71783902 -0.12285529  1.23488185  1.3224880574

回答1:

I'm not sure whether this is possible from the ggpairs function directly but you can extract a plot from ggpairs and modify it and then save it back.

This example loops over the lower triangle of the matrix of plots and replaces the existing x and y axis scales.

data(tips, package = "reshape")
## pm is the original ggpair object
pm <- ggpairs(tips[,c("total_bill", "tip", "size")])
## pm2 will be modified in the loop
pm2 <- pm
for(i in 2:pm$nrow) {
  for(j in 1:(i-1)) {
    pm2[i,j] <- pm[i,j] +
      scale_x_continuous(limits = c(-5, 75)) +
      scale_y_continuous(limits = c(-5, 10))
}
}

pm looks like this

and pm2 looks like this

To solve your problem, you'd loop over the entire matrix of plots and set the x and y scales to have limits of -1 to 1.

EDIT: Note that densities are unchanged as they are still on the original scale so be very careful with this approach of modifying some plots by hand as result could be misleading. I prefer the alternative approach using custom functions in ggpairs.

回答2:

I found a way to do this within ggpairs which uses a custom function to create the graphs

df <- read.table("test.txt")

upperfun <- function(data,mapping){
  ggplot(data = data, mapping = mapping)+
    geom_density2d()+
    scale_x_continuous(limits = c(-1.5,1.5))+
    scale_y_continuous(limits = c(-1.5,1.5))
}   

lowerfun <- function(data,mapping){
  ggplot(data = data, mapping = mapping)+
    geom_point()+
    scale_x_continuous(limits = c(-1.5,1.5))+
    scale_y_continuous(limits = c(-1.5,1.5))
}  


ggpairs(df,upper = list(continuous = wrap(upperfun)),
        lower = list(continuous = wrap(lowerfun)))      # Note: lower = continuous

With this kind of function it is as customizable as any ggplot!

来源：https://stackoverflow.com/questions/30720455/how-to-set-same-scales-across-different-facets-with-ggpairs

标签

ggplot2

ggally