问题
I have built a semi-supervised version of NLTK's Naive Bayes in Python based on the EM (expectation-maximization algorithm). However, in some iterations of EM I am getting negative log-likelihoods (the log-likelihoods of EM must be positive in every iteration), therefore I believe that there must be some mistakes in my code. After carefully reviewing my code, I have no idea why is this happenning. It would be really appreciated if someone could spot any mistakes in my code below:
(Reference material of semi-supervised Naive Bayes)
EM-algorithm main loop
#initial assumptions:
#Bernoulli NB: only feature presence (value 1) or absence (value None) is computed
#initial data:
#C: classifier trained with labeled data
#labeled_data: an array of tuples (feature dic, label)
#features: dictionary that outputs feature dictionary for a given document id
for iteration in range(1, self.maxiter):
#Expectation: compute probabilities for each class for each unlabeled document
#An array of tuples (feature dictionary, probability dist) is built
unlabeled_data = [(features[id],C.prob_classify(features[id])) for id in U]
#Maximization: given the probability distributions of previous step,
#update label, feature-label counts and update classifier C
#gen_freqdists is a custom function, see below
#gen_probdists is the original NLTK function
l_freqdist_act,ft_freqdist_act, ft_values_act = self.gen_freqdists(labeled_data,unlabeled_data)
l_probdist_act, ft_probdist_act = self.gen_probdists(l_freqdist_act, ft_freqdist_act, ft_values_act, ELEProbDist)
C = nltk.NaiveBayesClassifier(l_probdist_act, ft_probdist_act)
#Compute log-likelihood
#NLTK Naive bayes classifier prob_classify func gives logprob(class) + logprob(doc|class))
#for labeled data, sum logprobs output by the classifier for the label
#for unlabeled data, sum logprobs output by the classifier for each label
log_lh = sum([C.prob_classify(ftdic).prob(label) for (ftdic,label) in labeled_data])
log_lh += sum([C.prob_classify(ftdic).prob(label) for (ftdic,ignore) in unlabeled_data for label in l_freqdist_act.samples()])
#Continue until convergence
if log_lh_old == "first":
if self.debug: print "\tM: #iteration 1",log_lh,"(FIRST)"
log_lh_old = log_lh
else:
log_lh_diff = log_lh - log_lh_old
if self.debug: print "\tM: #iteration",iteration,log_lh_old,"->",log_lh,"(",log_lh_diff,")"
if log_lh_diff < self.log_lh_diff_min: break
log_lh_old = log_lh
Custom function gen-freqdists, used to create needed frequency distributions
def gen_freqdists(self, instances_l, instances_ul):
l_freqdist = FreqDist() #frequency distrib. of labels
ft_freqdist= defaultdict(FreqDist) #dictionary of freq. distrib. for ft-label pairs
ft_values = defaultdict(set) #dictionary of possible values for each ft (only 1/None)
fts = set() #set of all fts
#counts for labeled data
for (ftdic,label) in instances_l:
l_freqdist.inc(label,1)
for f in ftdic.keys():
fts.add(f)
ft_freqdist[label,f].inc(1,1)
ft_values[f].add(1)
#counts for unlabeled data
#we must compute maximum a posteriori label estimate
#and update label/ft occurrences accordingly
for (ftdic,probs) in instances_ul:
map_l = probs.max() #label with highest probability
map_p = probs.prob(map_l) #probability of map_l
l_freqdist.inc(map_l,count=map_p)
for f in ftdic.keys():
fts.add(f)
ft_freqdist[map_l,f].inc(1,count=map_p)
ft_values[f].add(1)
#features not appearing in documents get implicit None values
for l in l_freqdist.samples():
num_samples = l_freqdist[l]
for f in fts:
count = ft_freqdist[l,f].N()
ft_freqdist[l,f].inc(None, num_samples-count)
ft_values[f].add(None)
#return computed frequency distributions
return l_freqdist, ft_freqdist, ft_values
回答1:
I think you're summing the wrong values.
This is your code that is supposed to compute the sum of the log probs:
#Compute log-likelihood
#NLTK Naive bayes classifier prob_classify func gives logprob(class) + logprob(doc|class))
#for labeled data, sum logprobs output by the classifier for the label
#for unlabeled data, sum logprobs output by the classifier for each label
log_lh = sum([C.prob_classify(ftdic).prob(label) for (ftdic,label) in labeled_data])
log_lh += sum([C.prob_classify(ftdic).prob(label) for (ftdic,ignore) in unlabeled_data for label in l_freqdist_act.samples()])
According to the NLTK documentation for prob_classify (on NaiveBayesClassifier) a ProbDistI object is returned (not logprob(class) + logprob(doc|class)
). When you get this object, You're calling the prob
method on it for a given label. You probably want to call logprob
, and negate that return as well.
来源:https://stackoverflow.com/questions/13032114/semi-supervised-naive-bayes-with-nltk