How to fix TypeError: in setindex! in DifferentialEquations.jl

问题

Recently, I got started with Julia's (v1.0.3) DifferentialEquations.jl package. I tried solving a simple ODE system, with the same structure as my real model, but much smaller. Depending on the solver which I use, the example either solves or throws an error. Consider this MWE, a Chemical Engineering model of a consecutive / parallel reaction in a CSTR:

using DifferentialEquations
using Plots

# Modeling a consecutive / parallel reaction in a CSTR
# A --> 2B --> C, C --> 2B, B --> D
# PETERSEN-Matrix
#   No.     A       B       C       D       Rate
#   1      -1       2                       k1*A
#   2              -2       1               k2*B*B
#   3               2      -1               k3*C
#   4              -1               1       k4*B

function fpr(dx, x, params, t)
    k_1, k_2, k_3, k_4, q_in, V_liq, A_in, B_in, C_in, D_in = params
    # Rate equations
    rate = Array{Float64}(undef, 4)
    rate[1] = k_1*x[1]
    rate[2] = k_2*x[2]*x[2]
    rate[3] = k_3*x[3]
    rate[4] = k_4*x[2]

    dx[1] = -rate[1] + q_in/V_liq*(A_in - x[1])
    dx[2] = 2*rate[1] - 2*rate[2] + 2*rate[3] - rate[4] + q_in/V_liq*(B_in - x[2])
    dx[3] = rate[2] - rate[3] + q_in/V_liq*(C_in - x[3])
    dx[4] = rate[4] + q_in/V_liq*(D_in - x[4])
end 

u0 = [1.5, 0.1, 0, 0]
params = [1.0, 1.5, 0.75, 0.15, 3, 15, 0.5, 0, 0, 0]
tspan = (0.0, 15.0)
prob = ODEProblem(fpr, u0, tspan, params)
sol = solve(prob)
plot(sol)

This works perfectly. However, if a choose a different solver, say Rosenbrock23() or Rodas4(), the ODE is not solved and I get the following error:

ERROR: LoadError: TypeError: in setindex!, in typeassert, expected Float64,
got ForwardDiff.Dual{Nothing,Float64,4}

I won't paste the whole stacktrace here, since it is very long, but you can easily reproduce this by changing sol = solve(prob) into sol = solve(prob, Rosenbrock23()). It seems to me that the error occurs when the solver tries to derive Jacobians, but I have no clue why. And why does the default solver work, but others don't?

Please, could anyone tell me why this error occurs and how it can be fixed?

回答1:

Automatic differentiation works by passing Dual types through your function, instead of the floats you would normally use it with. So the problem arises because you fix the internal value rate to be of type Vector{Float64} (see the third point here, and this advice). Fortunately, that's easy to fix (and even better looking, IMHO):

julia> function fpr(dx, x, params, t)
           k_1, k_2, k_3, k_4, q_in, V_liq, A_in, B_in, C_in, D_in = params
           # Rate equations
           # should actually be rate = [k_1*x[1], k_2*x[2]*x[2], k_3*x[3], k_4*x[2]], as per @LutzL's comment
           rate = [k_1*x[1], k_2*x[2], k_3*x[3], k_4*x[2]]

           dx[1] = -rate[1] + q_in/V_liq*(A_in - x[1])
           dx[2] = 2*rate[1] - 2*rate[2] + 2*rate[3] - rate[4] + q_in/V_liq*(B_in - x[2])
           dx[3] = rate[2] - rate[3] + q_in/V_liq*(C_in - x[3])
           dx[4] = rate[4] + q_in/V_liq*(D_in - x[4])
       end

That works with both Rosenbrock23 and Rodas4.

Alternatively, you can turn off AD with Rosenbrock23(autodiff=false) (which, I think, will use finite differences instead), or supply a Jacobian.

来源：https://stackoverflow.com/questions/54422068/how-to-fix-typeerror-in-setindex-in-differentialequations-jl

标签

julia

typeerror

ode

differential-equations