Write single CSV file using spark-csv

问题

I am using https://github.com/databricks/spark-csv , I am trying to write a single CSV, but not able to, it is making a folder.

Need a Scala function which will take parameter like path and file name and write that CSV file.

回答1:

It is creating a folder with multiple files, because each partition is saved individually. If you need a single output file (still in a folder) you can repartition (preferred if upstream data is large, but requires a shuffle):

df
   .repartition(1)
   .write.format("com.databricks.spark.csv")
   .option("header", "true")
   .save("mydata.csv")

or coalesce:

df
   .coalesce(1)
   .write.format("com.databricks.spark.csv")
   .option("header", "true")
   .save("mydata.csv")

data frame before saving:

All data will be written to mydata.csv/part-00000. Before you use this option be sure you understand what is going on and what is the cost of transferring all data to a single worker. If you use distributed file system with replication, data will be transfered multiple times - first fetched to a single worker and subsequently distributed over storage nodes.

Alternatively you can leave your code as it is and use general purpose tools like cat or HDFS getmerge to simply merge all the parts afterwards.

回答2:

If you are running Spark with HDFS, I've been solving the problem by writing csv files normally and leveraging HDFS to do the merging. I'm doing that in Spark (1.6) directly:

import org.apache.hadoop.conf.Configuration
import org.apache.hadoop.fs._

def merge(srcPath: String, dstPath: String): Unit =  {
   val hadoopConfig = new Configuration()
   val hdfs = FileSystem.get(hadoopConfig)
   FileUtil.copyMerge(hdfs, new Path(srcPath), hdfs, new Path(dstPath), true, hadoopConfig, null) 
   // the "true" setting deletes the source files once they are merged into the new output
}


val newData = << create your dataframe >>


val outputfile = "/user/feeds/project/outputs/subject"  
var filename = "myinsights"
var outputFileName = outputfile + "/temp_" + filename 
var mergedFileName = outputfile + "/merged_" + filename
var mergeFindGlob  = outputFileName

    newData.write
        .format("com.databricks.spark.csv")
        .option("header", "false")
        .mode("overwrite")
        .save(outputFileName)
    merge(mergeFindGlob, mergedFileName )
    newData.unpersist()

Can't remember where I learned this trick, but it might work for you.

回答3:

I might be a little late to the game here, but using coalesce(1) or repartition(1) may work for small data-sets, but large data-sets would all be thrown into one partition on one node. This is likely to throw OOM errors, or at best, to process slowly.

I would highly suggest that you use the FileUtil.copyMerge() function from the Hadoop API. This will merge the outputs into a single file.

EDIT - This effectively brings the data to the driver rather than an executor node. Coalesce() would be fine if a single executor has more RAM for use than the driver.

EDIT 2: copyMerge() is being removed in Hadoop 3.0. See the following stack overflow article for more information on how to work with the newest version: How to do CopyMerge in Hadoop 3.0?

回答4:

If you are using Databricks and can fit all the data into RAM on one worker (and thus can use .coalesce(1)), you can use dbfs to find and move the resulting CSV file:

val fileprefix= "/mnt/aws/path/file-prefix"

dataset
  .coalesce(1)       
  .write             
//.mode("overwrite") // I usually don't use this, but you may want to.
  .option("header", "true")
  .option("delimiter","\t")
  .csv(fileprefix+".tmp")

val partition_path = dbutils.fs.ls(fileprefix+".tmp/")
     .filter(file=>file.name.endsWith(".csv"))(0).path

dbutils.fs.cp(partition_path,fileprefix+".tab")

dbutils.fs.rm(fileprefix+".tmp",recurse=true)

If your file does not fit into RAM on the worker, you may want to consider chaotic3quilibrium's suggestion to use FileUtils.copyMerge(). I have not done this, and don't yet know if is possible or not, e.g., on S3.

This answer is built on previous answers to this question as well as my own tests of the provided code snippet. I originally posted it to Databricks and am republishing it here.

The best documentation for dbfs's rm's recursive option I have found is on a Databricks forum.

回答5:

repartition/coalesce to 1 partition before you save (you'd still get a folder but it would have one part file in it)

回答6:

you can use rdd.coalesce(1, true).saveAsTextFile(path)

it will store data as singile file in path/part-00000

回答7:

A solution that works for S3 modified from Minkymorgan.

Simply pass the temporary partitioned directory path (with different name than final path) as the srcPath and single final csv/txt as destPath Specify also deleteSource if you want to remove the original directory.

/**
* Merges multiple partitions of spark text file output into single file. 
* @param srcPath source directory of partitioned files
* @param dstPath output path of individual path
* @param deleteSource whether or not to delete source directory after merging
* @param spark sparkSession
*/
def mergeTextFiles(srcPath: String, dstPath: String, deleteSource: Boolean): Unit =  {
  import org.apache.hadoop.fs.FileUtil
  import java.net.URI
  val config = spark.sparkContext.hadoopConfiguration
  val fs: FileSystem = FileSystem.get(new URI(srcPath), config)
  FileUtil.copyMerge(
    fs, new Path(srcPath), fs, new Path(dstPath), deleteSource, config, null
  )
}

回答8:

spark's df.write() API will create multiple part files inside given path ... to force spark write only a single part file use df.coalesce(1).write.csv(...) instead of df.repartition(1).write.csv(...) as coalesce is a narrow transformation whereas repartition is a wide transformation see Spark - repartition() vs coalesce()

df.coalesce(1).write.csv(filepath,header=True)

will create folder in given filepath with one part-0001-...-c000.csv file use

cat filepath/part-0001-...-c000.csv > filename_you_want.csv

to have a user friendly filename

回答9:

There is one more way to use Java

import java.io._

def printToFile(f: java.io.File)(op: java.io.PrintWriter => Unit) 
  {
     val p = new java.io.PrintWriter(f);  
     try { op(p) } 
     finally { p.close() }
  } 

printToFile(new File("C:/TEMP/df.csv")) { p => df.collect().foreach(p.println)}

来源：https://stackoverflow.com/questions/31674530/write-single-csv-file-using-spark-csv

标签

scala

csv

apache-spark

spark-csv