Calculate a grouped median in pyspark

问题

When using pyspark, I'd like to be able to calculate the difference between grouped values and their median for the group. Is this possible? Here is some code I hacked up that does what I want except that it calculates the grouped diff from mean. Also, please feel free to comment on how I could make this better if you feel like being helpful :)

from pyspark import SparkContext
from pyspark.sql import SparkSession
from pyspark.sql.types import (
    StringType,
    LongType,
    DoubleType,
    StructField,
    StructType
)
from pyspark.sql import functions as F


sc = SparkContext(appName='myapp')
spark = SparkSession(sc)

file_name = 'data.csv'

fields = [
    StructField(
        'group2',
        LongType(),
        True),
    StructField(
        'name',
        StringType(),
        True),
    StructField(
        'value',
        DoubleType(),
        True),
    StructField(
        'group1',
        LongType(),
        True)
]
schema = StructType(fields)

df = spark.read.csv(
    file_name, header=False, mode="DROPMALFORMED", schema=schema
)
df.show()
means = df.select([
    'group1',
    'group2',
    'name',
    'value']).groupBy([
        'group1',
        'group2'
    ]).agg(
        F.mean('value').alias('mean_value')
    ).orderBy('group1', 'group2')

cond = [df.group1 == means.group1, df.group2 == means.group2]

means.show()
df = df.select([
    'group1',
    'group2',
    'name',
    'value']).join(
        means,
        cond
    ).drop(
        df.group1
    ).drop(
        df.group2
    ).select('group1',
             'group2',
             'name',
             'value',
             'mean_value')

final = df.withColumn(
    'diff',
    F.abs(df.value - df.mean_value))
final.show()

sc.stop()

And here is an example dataset I'm playing with:

100,name1,0.43,0
100,name2,0.33,0
100,name3,0.73,0
101,name1,0.29,0
101,name2,0.96,0
101,name3,0.42,0
102,name1,0.01,0
102,name2,0.42,0
102,name3,0.51,0
103,name1,0.55,0
103,name2,0.45,0
103,name3,0.02,0
104,name1,0.93,0
104,name2,0.16,0
104,name3,0.74,0
105,name1,0.41,0
105,name2,0.65,0
105,name3,0.29,0
100,name1,0.51,1
100,name2,0.51,1
100,name3,0.43,1
101,name1,0.59,1
101,name2,0.55,1
101,name3,0.84,1
102,name1,0.01,1
102,name2,0.98,1
102,name3,0.44,1
103,name1,0.47,1
103,name2,0.16,1
103,name3,0.02,1
104,name1,0.83,1
104,name2,0.89,1
104,name3,0.31,1
105,name1,0.59,1
105,name2,0.77,1
105,name3,0.45,1

and here is what I'm trying to produce:

group1,group2,name,value,median,diff
0,100,name1,0.43,0.43,0.0
0,100,name2,0.33,0.43,0.10
0,100,name3,0.73,0.43,0.30
0,101,name1,0.29,0.42,0.13
0,101,name2,0.96,0.42,0.54
0,101,name3,0.42,0.42,0.0
0,102,name1,0.01,0.42,0.41
0,102,name2,0.42,0.42,0.0
0,102,name3,0.51,0.42,0.09
0,103,name1,0.55,0.45,0.10
0,103,name2,0.45,0.45,0.0
0,103,name3,0.02,0.45,0.43
0,104,name1,0.93,0.74,0.19
0,104,name2,0.16,0.74,0.58
0,104,name3,0.74,0.74,0.0
0,105,name1,0.41,0.41,0.0
0,105,name2,0.65,0.41,0.24
0,105,name3,0.29,0.41,0.24
1,100,name1,0.51,0.51,0.0
1,100,name2,0.51,0.51,0.0
1,100,name3,0.43,0.51,0.08
1,101,name1,0.59,0.59,0.0
1,101,name2,0.55,0.59,0.04
1,101,name3,0.84,0.59,0.25
1,102,name1,0.01,0.44,0.43
1,102,name2,0.98,0.44,0.54
1,102,name3,0.44,0.44,0.0
1,103,name1,0.47,0.16,0.31
1,103,name2,0.16,0.16,0.0
1,103,name3,0.02,0.16,0.14
1,104,name1,0.83,0.83,0.0
1,104,name2,0.89,0.83,0.06
1,104,name3,0.31,0.83,0.52
1,105,name1,0.59,0.59,0.0
1,105,name2,0.77,0.59,0.18
1,105,name3,0.45,0.59,0.14

回答1:

You can solve it using udf function median to it.First let's create simple example given above.

# example data
ls = [[100,'name1',0.43,0],
      [100,'name2',0.33,0],
      [100,'name3',0.73,0],
      [101,'name1',0.29,0],
      [101,'name2',0.96,0],
      [...]]
df = spark.createDataFrame(ls, schema=['a', 'b', 'c', 'd'])

Here is the udf function for calculating median

# udf for median
import numpy as np
import pyspark.sql.functions as func

def median(values_list):
    med = np.median(values_list)
    return float(med)
udf_median = func.udf(median, FloatType())

group_df = df.groupby(['a', 'd'])
df_grouped = group_df.agg(udf_median(func.collect_list(col('c'))).alias('median'))
df_grouped.show()

Finally, you can join it back with original df on in order to get median column back.

df_grouped = df_grouped.withColumnRenamed('a', 'a_').withColumnRenamed('d', 'd_')
df_final = df.join(df_grouped, [df.a == df_grouped.a_, df.d == df_grouped.d_]).select('a', 'b', 'c', 'median')
df_final = df_final.withColumn('diff', func.round(func.col('c') - func.col('median'), scale=2))

note that I use round at the end to prevent extra digits that come up after median operation.

来源：https://stackoverflow.com/questions/42961456/calculate-a-grouped-median-in-pyspark

标签

apache-spark

pyspark

apache-spark-sql