问题
I'm currently trying to run a Python program that uses RDKit and am facing an error. The get straight to the point, the complete traceback is:
Traceback (most recent call last):
File "./main.py", line 4, in <module>
from train import Trainer
File "/home/user1/repo1/train.py", line 12, in <module>
from utils import make_batches
File "/home/user1/repo1/utils.py", line 9, in <module>
from rdkit import Chem, DataStructs
File "/home/user1/anaconda3/envs/user1conda/lib/python3.7/site-packages/rdkit/Chem/__init__.py", line 18, in <module>
from rdkit import DataStructs
File "/home/user1/anaconda3/envs/user1conda/lib/python3.7/site-packages/rdkit/DataStructs/__init__.py", line 13, in <module>
from rdkit.DataStructs import cDataStructs
ImportError: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `CXXABI_1.3.11' not found (required by /home/user1/anaconda3/envs/user1/lib/python3.7/site-packages/rdkit/DataStructs/../../../../libRDKitDataStructs.so.1)
I've taken a look at this Git Issue and tried all the suggestions there, but none of them have worked. I also took a look at the following Stack Overflow questions as well: uwsgi: /usr/lib/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /usr/lib/x86_64-linux-gnu/libicuuc.so.55 and /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version CXXABI_1.3.8' not found [closed] but the answers have not been able to solve my problem either.
For a bit more information:
- OS: Ubuntu 16.04
- Python version: 3.7.5
- Output of
echo $LD_LIBRARY_PATHis currently nothing (I've tried to set this to what the answers have suggested). - I'm currently using a Conda environment and also downloaded RDKit from Anaconda.
Would anyone know what the potential problem may be? I'm a bit perplexed as nothing seems to be working and I don't know where to start diagnosing the problem. Thanks in advance.
来源：https://stackoverflow.com/questions/59587320/getting-importerror-usr-lib-x86-64-linux-gnu-libstdc-so-6-version-cxxabi-1