rpart

What is the difference between rel error and x error in a rpart decision tree?

狂风中的少年 提交于 2019-12-03 00:35:15
I have a purely categorical dataframe from the UCI machine learning database https://archive.ics.uci.edu/ml/datasets/Diabetes+130-US+hospitals+for+years+1999-2008 I am using rpart to form a decision tree based on a new category on whether patients return before 30 days (a new failed category). I am using the following parameters for my decision tree tree_model <- rpart(Failed ~ race + gender + age+ time_in_hospital+ medical_specialty + num_lab_procedures+ num_procedures+num_medications+number_outpatient+number_emergency+number_inpatient+number_diagnoses+max_glu_serum+ A1Cresult+metformin

How to specify minbucket in caret train for?

。_饼干妹妹 提交于 2019-12-02 20:43:56
问题 For CART model, caret seems to only provide tunning of complexity parameter. Is there way to tune other parameters such as minbucket? 回答1: Arguments passed to the classification or regression routines are included in the dots parameter. As you want to include minbucket , parameter control should be included inside train . As example: library("caret") train(Kyphosis ~ Age + Number + Start, data = kyphosis, method = "rpart", tuneGrid = data.frame(cp = c(0.01, 0.05)), control = rpart.control

How do I make a regression tree like this?

匆匆过客 提交于 2019-12-02 03:53:10
问题 I would like to make a regression tree like the one in the picture. The tree was done in Cubist but I don't have that program. I do use R and Python. It seems to differ from the R packages rpart or tree in that the end nodes are linear formulas rather than just the average value. Is there any way I can do this using R or some other free software? In the picture, NDVI, B1,B2, etc are variables. The image is from this website. 回答1: Cubist is an R port of the Cubist GPL C code released by

How do I make a regression tree like this?

北战南征 提交于 2019-12-02 02:01:50
I would like to make a regression tree like the one in the picture. The tree was done in Cubist but I don't have that program. I do use R and Python. It seems to differ from the R packages rpart or tree in that the end nodes are linear formulas rather than just the average value. Is there any way I can do this using R or some other free software? In the picture, NDVI, B1,B2, etc are variables. The image is from this website . Cubist is an R port of the Cubist GPL C code released by RuleQuest at http://rulequest.com/cubist-info.html . Using the example from help('cubist') and the original

Reading rpart Input Parameters from a Text Variable

℡╲_俬逩灬. 提交于 2019-12-02 00:45:30
问题 I'm using rpart to make a decision tree. For example: fit <- rpart(Kyphosis ~ Age + Number + Start, data=kyphosis) How do I read in the formula part from a text file and get it in a format that rpart likes? I've tried: predictor_variables <- c("Age", "Number", "Start") rpart_formula <- Kyphosis ~ parse(text=paste(predictor_variables, collapse="+")) fit <- rpart(rpart_formula, data=kyphosis) but I get an error: invalid type (expression) for variable 'parse(text = paste(predictor_variables,

Reading rpart Input Parameters from a Text Variable

ε祈祈猫儿з 提交于 2019-12-01 21:52:47
I'm using rpart to make a decision tree. For example: fit <- rpart(Kyphosis ~ Age + Number + Start, data=kyphosis) How do I read in the formula part from a text file and get it in a format that rpart likes? I've tried: predictor_variables <- c("Age", "Number", "Start") rpart_formula <- Kyphosis ~ parse(text=paste(predictor_variables, collapse="+")) fit <- rpart(rpart_formula, data=kyphosis) but I get an error: invalid type (expression) for variable 'parse(text = paste(predictor_variables, collapse = "+"))' How can I format rpart_formula so that rpart sees it correctly? Use as.formula : rpart

Splits and Root node of binary decision tree(CART)

旧时模样 提交于 2019-12-01 20:27:45
问题 How to find a split and root node in a regression tree, I made a regression tree from multiple vectors now I have to extract root node of rpart of multiple vectors.file contains numeric value of multiple vectors A , B , C , D , E , F , G , H ex. A vector contains 4,3,6,7,2,4,5,...and so on similarly others B,C,D,E,F,G,H .so want to extract F (which is a root node in my case) as an output from this input an after creating a tree .thank you.sorry unable to put any image :( Here's what I've done

Splits and Root node of binary decision tree(CART)

杀马特。学长 韩版系。学妹 提交于 2019-12-01 20:10:10
How to find a split and root node in a regression tree, I made a regression tree from multiple vectors now I have to extract root node of rpart of multiple vectors.file contains numeric value of multiple vectors A , B , C , D , E , F , G , H ex. A vector contains 4,3,6,7,2,4,5,...and so on similarly others B,C,D,E,F,G,H .so want to extract F (which is a root node in my case) as an output from this input an after creating a tree .thank you.sorry unable to put any image :( Here's what I've done so far log_data <- read.csv(file="C:\\Users\\AASHU\\Desktop\\CART\\syn.csv", header=T, as.is=T)

Plot ctree using rpart.plot functionality

我与影子孤独终老i 提交于 2019-12-01 08:42:15
Been trying to use the rpart.plot package to plot a ctree from the partykit library. The reason for this being that the default plot method is terrible when the tree is deep. In my case, my max_depth = 5 . I really enjoy rpart.plot 's output as it allows for deep trees to visually display better. How the output looks for a simple example: rpart library(partykit) library(rpart) library(rpart.plot) df_test <- cu.summary[complete.cases(cu.summary),] multi.class.model <- rpart(Reliability~., data = df_test) rpart.plot(multi.class.model) I would like to get this output from the partykit model using

Plot ctree using rpart.plot functionality

别说谁变了你拦得住时间么 提交于 2019-12-01 06:40:25
问题 Been trying to use the rpart.plot package to plot a ctree from the partykit library. The reason for this being that the default plot method is terrible when the tree is deep. In my case, my max_depth = 5 . I really enjoy rpart.plot 's output as it allows for deep trees to visually display better. How the output looks for a simple example: rpart library(partykit) library(rpart) library(rpart.plot) df_test <- cu.summary[complete.cases(cu.summary),] multi.class.model <- rpart(Reliability~., data