networkx

Set a different color for a path

心已入冬 提交于 2021-02-10 20:28:27
问题 I have a weighted graph,G, extracted from a text file: i j distance 1 2 6000 1 3 4000 2 1 6000 2 6 5000 .... And I have specific a route (not a shortest path) that I want to plot on graph G, i.e. [1, 2, 6, 7] that starts from node 1, end at node 7 by visiting node 2 and node 6. Here the code I've tried. But since Im new in python and networkx package as well, I couldn't get the result that Im looking for. G = nx.read_edgelist('Graph.txt', data=(('weight',float),)) r=[1,2,6,7] edges=[] route

Set a different color for a path

Deadly 提交于 2021-02-10 20:23:38
问题 I have a weighted graph,G, extracted from a text file: i j distance 1 2 6000 1 3 4000 2 1 6000 2 6 5000 .... And I have specific a route (not a shortest path) that I want to plot on graph G, i.e. [1, 2, 6, 7] that starts from node 1, end at node 7 by visiting node 2 and node 6. Here the code I've tried. But since Im new in python and networkx package as well, I couldn't get the result that Im looking for. G = nx.read_edgelist('Graph.txt', data=(('weight',float),)) r=[1,2,6,7] edges=[] route

How to fix graphics being cut off when drawing NetworkX graphs with Matplotlib?

廉价感情. 提交于 2021-02-10 12:57:39
问题 I am using NetworkX and Matplotlib to draw nodes, but the nodes are sometimes being cut off at the edge of the graphic. Is there a setting to increase the margins or prevent them from being cut off? Image: Nodes being cut off at the edge of the graphic Example program: import networkx as nx import matplotlib.pyplot as plt import numpy as np adjacency_matrix = np.array([[1,0,0,0,0,0,1,0],[0,1,1,1,1,0,0,0],[0,1,1,0,0,0,0,0],[0,1,0,1,0,0,0,0], [0,1,0,0,1,1,0,0],[0,0,0,0,1,1,1,1],[1,0,0,0,0,1,1,0

How to fix graphics being cut off when drawing NetworkX graphs with Matplotlib?

≯℡__Kan透↙ 提交于 2021-02-10 12:57:20
问题 I am using NetworkX and Matplotlib to draw nodes, but the nodes are sometimes being cut off at the edge of the graphic. Is there a setting to increase the margins or prevent them from being cut off? Image: Nodes being cut off at the edge of the graphic Example program: import networkx as nx import matplotlib.pyplot as plt import numpy as np adjacency_matrix = np.array([[1,0,0,0,0,0,1,0],[0,1,1,1,1,0,0,0],[0,1,1,0,0,0,0,0],[0,1,0,1,0,0,0,0], [0,1,0,0,1,1,0,0],[0,0,0,0,1,1,1,1],[1,0,0,0,0,1,1,0

Plotting similarity matrix using Networkx

冷暖自知 提交于 2021-02-09 07:18:50
问题 I am trying to visualize correlations(similarity score up to 1) between words using networkx For example similarity scores between dog, cat, animal, person, wolf Ive tried using this code to plot similarity distances between each word/node import networkx as nx import matplotlib.pyplot as plt G=nx.Graph() corr_data =([['Dog', 'Dog', 1.0], ['Cat', 'Dog', 0.8016854524612427], ['Wolf', 'Dog', 0.5206573009490967], ['Person', 'Dog', 0.3756750822067261], ['Animal', 'Dog', 0.6618534326553345], ['Cat

Plotting similarity matrix using Networkx

|▌冷眼眸甩不掉的悲伤 提交于 2021-02-09 07:09:10
问题 I am trying to visualize correlations(similarity score up to 1) between words using networkx For example similarity scores between dog, cat, animal, person, wolf Ive tried using this code to plot similarity distances between each word/node import networkx as nx import matplotlib.pyplot as plt G=nx.Graph() corr_data =([['Dog', 'Dog', 1.0], ['Cat', 'Dog', 0.8016854524612427], ['Wolf', 'Dog', 0.5206573009490967], ['Person', 'Dog', 0.3756750822067261], ['Animal', 'Dog', 0.6618534326553345], ['Cat

Plotting similarity matrix using Networkx

这一生的挚爱 提交于 2021-02-09 07:01:58
问题 I am trying to visualize correlations(similarity score up to 1) between words using networkx For example similarity scores between dog, cat, animal, person, wolf Ive tried using this code to plot similarity distances between each word/node import networkx as nx import matplotlib.pyplot as plt G=nx.Graph() corr_data =([['Dog', 'Dog', 1.0], ['Cat', 'Dog', 0.8016854524612427], ['Wolf', 'Dog', 0.5206573009490967], ['Person', 'Dog', 0.3756750822067261], ['Animal', 'Dog', 0.6618534326553345], ['Cat

Python: all simple paths in a directed graph

岁酱吖の 提交于 2021-02-08 08:31:34
问题 I am working with a (number of) directed graphs with no cycles in them, and I have the need to find all simple paths between any two nodes. In general I wouldn't worry about the execution time, but I have to do this for very many nodes during very many timesteps - I am dealing with a time-based simulation. I had tried in the past the facilities offered by NetworkX but in general I found them slower than my approach. Not sure if anything has changed lately. I have implemented this recursive

Python: all simple paths in a directed graph

徘徊边缘 提交于 2021-02-08 08:31:09
问题 I am working with a (number of) directed graphs with no cycles in them, and I have the need to find all simple paths between any two nodes. In general I wouldn't worry about the execution time, but I have to do this for very many nodes during very many timesteps - I am dealing with a time-based simulation. I had tried in the past the facilities offered by NetworkX but in general I found them slower than my approach. Not sure if anything has changed lately. I have implemented this recursive

Python NetworkX error: module 'networkx.drawing' has no attribute 'graphviz_layout'

白昼怎懂夜的黑 提交于 2021-02-08 07:33:32
问题 I am teaching myself Python and NLTK for work using the book "Natural Language Processing with Python" ("www.nltk.org/book"). I am stuck on Chapter 4 Section 4 part 8 on NetworkX. When I try to run example 4.15, it should draw a graph, but instead I get the following error message: AttributeError: module 'networkx.drawing' has no attribute 'graphviz_layout' The culprit code line appears to be >>> nx.draw_graphviz(graph, node_size = [16 * graph.degree(n) for n in graph], node_color = [graph