biplot

Plot PCA loadings and loading in biplot in sklearn (like R's autoplot)

守給你的承諾、 提交于 2020-01-09 13:09:29
问题 I saw this tutorial in R w/ autoplot . They plotted the loadings and loading labels: autoplot(prcomp(df), data = iris, colour = 'Species', loadings = TRUE, loadings.colour = 'blue', loadings.label = TRUE, loadings.label.size = 3) https://cran.r-project.org/web/packages/ggfortify/vignettes/plot_pca.html I prefer Python 3 w/ matplotlib, scikit-learn, and pandas for my data analysis. However, I don't know how to add these on? How can you plot these vectors w/ matplotlib ? I've been reading

Plot PCA loadings and loading in biplot in sklearn (like R's autoplot)

强颜欢笑 提交于 2020-01-09 13:08:38
问题 I saw this tutorial in R w/ autoplot . They plotted the loadings and loading labels: autoplot(prcomp(df), data = iris, colour = 'Species', loadings = TRUE, loadings.colour = 'blue', loadings.label = TRUE, loadings.label.size = 3) https://cran.r-project.org/web/packages/ggfortify/vignettes/plot_pca.html I prefer Python 3 w/ matplotlib, scikit-learn, and pandas for my data analysis. However, I don't know how to add these on? How can you plot these vectors w/ matplotlib ? I've been reading

Plot PCA loadings and loading in biplot in sklearn (like R's autoplot)

霸气de小男生 提交于 2019-11-30 05:14:34
I saw this tutorial in R w/ autoplot . They plotted the loadings and loading labels: autoplot(prcomp(df), data = iris, colour = 'Species', loadings = TRUE, loadings.colour = 'blue', loadings.label = TRUE, loadings.label.size = 3) https://cran.r-project.org/web/packages/ggfortify/vignettes/plot_pca.html I prefer Python 3 w/ matplotlib, scikit-learn, and pandas for my data analysis. However, I don't know how to add these on? How can you plot these vectors w/ matplotlib ? I've been reading Recovering features names of explained_variance_ratio_ in PCA with sklearn but haven't figured it out yet

Add legend to scatter plot (PCA)

半腔热情 提交于 2019-11-26 12:32:50
I am a newbie with python and found this excellent PCA biplot suggestion ( Plot PCA loadings and loading in biplot in sklearn (like R's autoplot) ). Now I tried to add a legend to the plot for the different targets. But the command plt.legend() doesn't work. Is there an easy way to do it? As an example, the iris data with the biplot code from the link above. import numpy as np import matplotlib.pyplot as plt from sklearn import datasets from sklearn.decomposition import PCA import pandas as pd from sklearn.preprocessing import StandardScaler iris = datasets.load_iris() X = iris.data y = iris

Add legend to scatter plot (PCA)

依然范特西╮ 提交于 2019-11-26 04:01:36
问题 I am a newbie with python and found this excellent PCA biplot suggestion (Plot PCA loadings and loading in biplot in sklearn (like R's autoplot)). Now I tried to add a legend to the plot for the different targets. But the command plt.legend() doesn\'t work. Is there an easy way to do it? As an example, the iris data with the biplot code from the link above. import numpy as np import matplotlib.pyplot as plt from sklearn import datasets from sklearn.decomposition import PCA import pandas as pd