问题
I'm very curious about the ways to override the color value of the default red dashed line for average silhouette width in the fviz_silhouette function. Just peeked the fviz_silhouette code, and it puzzling me, why the author fixed line color parameter? (Listing from the function source code.)
p <- ggplot(df, mapping) + geom_bar(stat = "identity") + labs(y = "Silhouette width Si", x = "", title = paste0("Clusters silhouette plot ",
"\n Average silhouette width: ", round(mean(df$sil_width),
2))) + ggplot2::ylim(c(NA, 1)) + geom_hline(yintercept = mean(df$sil_width),
linetype = "dashed", color = "red")
p <- ggpubr::ggpar(p, ...)
And the result with palette = "grey" and + theme_bw(), still preserves red dashed line, as in the image bellow.
回答1:
You can edit the color via
p$layers[[2]]$aes_params$colour <- "black" # or whatever color you like
To demonstrate first make a plot (with the default red color line):
library(factoextra)
library(cluster)
data("iris")
iris.scaled <- scale(iris[, -5])
km.res <- kmeans(iris.scaled, 3, nstart = 2)
sil <- silhouette(km.res$cluster, dist(iris.scaled))
p <- fviz_silhouette(sil)
p
Now change the color to black:
p$layers[[2]]$aes_params$colour <- "black"
p
来源:https://stackoverflow.com/questions/61548005/factoextra-how-to-change-color-of-the-average-silhouette-width-in-the-fviz-silh