Permissions-error using bash-script to install a library in R

问题

I am running a software called CNV-Seq in a Bash script but, I do not have permission to run the following command:

R CMD INSTALL cnv/

The error is

* installing to library '/share/apps/r/3.2.2/intel/lib64/R/library'
Error: ERROR: no permission to install to directory '/share/apps/r/3.2.2/intel/lib64/R/library'

How can I solve this problem without gaining permission.

回答1:

One approach is creating the bash script that executes R script. So, the R script will contain:

install.packages("package_name")

Save it as xyz.r

and the bash script will contain:

R -f path_to/xyz.r

Save that as abc.

Run the bash script like this:

bash abc

来源：https://stackoverflow.com/questions/33697267/permissions-error-using-bash-script-to-install-a-library-in-r