问题
Trying to build my first R
package using roxygen2
and devtools
. I have added a function that uses %>%
and mutate
in the @examples
section. When I run check()
it fails, because it cannot find the function %>%
or mutate
.
Based on this, this, and this I have tried the following:
I have #' importFrom magrittr %>%
and #' importFrom dplyr mutate
in the function's .R
file. I also have magrittr
and dplyr
under Imports:
in the DESCRIPTION
file. After running document()
, my NAMESPACE
file contains importFrom(dplyr,mutate)
and importFrom(magrittr,"%>%")
.
minimal R/test.R
file:
#' Conditional mutate
#'
#' \code{mutate_cond} mutates the \code{data.frame} only on the rows that
#' satisfy the condition.
#'
#' @param .data \code{data.frame}
#' @param condition expression with the condition to be evaluated
#' @param ... arguments passed to \code{mutate}
#' @param envir environment inherited from \code{parent.frame()}
#'
#' @return \code{data.frame}
#' @importFrom dplyr mutate
#' @importFrom magrittr %>%
#'
#' @examples
#' data(iris)
#' iris %>%
#' mutate(aux = 0) %>%
#' mutate_cond(Petal.Length > 1.3,aux = 3)
#'
#' @export
mutate_cond <- function(.data, condition, ..., envir = parent.frame()) {
condition <- eval(substitute(condition), .data, envir)
.data[condition, ] <- .data[condition, ] %>% mutate(...)
.data
}
minimal DESCRIPTION
file:
Package: test
Version: 0.1
Date: 2019-06-07
Title: Functions
Description: Some functions I use.
Author: me
Maintainer: me <myemail@email.com>
Encoding: UTF-8
License: GPL-3
Imports: dplyr, magrittr
NAMESPACE
generated with document()
:
# Generated by roxygen2: do not edit by hand
export(mutate_cond)
importFrom(dplyr,mutate)
importFrom(magrittr,"%>%")
I expect this example code to run successfully and pass check()
. Instead I get this error message:
❯ checking examples ... ERROR
Running examples in ‘test-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mutate_cond
> ### Title: Conditional mutate
> ### Aliases: mutate_cond
>
> ### ** Examples
>
> data(iris)
> iris %>%
+ mutate(aux = 0) %>%
+ mutate_cond(Petal.Length > 1.3,aux = 3)
Error in iris %>% mutate(aux = 0) %>% mutate_cond(Petal.Length > 1.3, :
could not find function "%>%"
Execution halted
1 error ✖ | 0 warnings ✔ | 0 notes ✔
Also, if I add require(dplyr)
and require(magrittr)
to the @examples
section the error goes away or if I remove the whole @examples
section the error goes away.
Why won't this package pass check()
?
Thank you!
回答1:
Adding
exportPattern("^[[:alpha:]]+")
to my NAMESPACE file solved the problem on my side.
回答2:
Running usethis::use_pipe()
in the console will do the trick as well.
来源:https://stackoverflow.com/questions/56509068/r-package-fails-devtoolscheck-because-could-not-find-function-even-though-t