Moving error bars in a line graph with three factors

问题

I am trying to make the error bars black in a line graph that has three factors....

structure(list(pot = c(41L, 42L, 43L, 44L, 61L, 62L, 63L, 64L, 
45L, 46L, 47L, 48L, 65L, 66L, 67L, 68L, 49L, 50L, 51L, 52L, 69L, 
70L, 71L, 72L, 53L, 54L, 55L, 56L, 73L, 74L, 75L, 76L, 57L, 58L, 
59L, 60L, 77L, 78L, 79L, 80L, 81L, 82L, 83L, 84L, 101L, 102L, 
103L, 104L, 85L, 86L, 87L, 88L, 105L, 106L, 107L, 108L, 89L, 
90L, 91L, 92L, 109L, 110L, 111L, 112L, 93L, 94L, 95L, 96L, 113L, 
114L, 115L, 116L, 97L, 98L, 99L, 100L, 117L, 118L, 119L, 120L
), rep = c(1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 
2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 
2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 
2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 
2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 2L, 3L, 4L, 1L, 
2L, 3L, 4L), cultivar = structure(c(4L, 4L, 4L, 4L, 4L, 4L, 4L, 
4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 
4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 
4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L), .Label = c("Dinninup", "Riverina", 
"Seaton Park", "Yarloop"), class = "factor"), Waterlogging = structure(c(2L, 
2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 
2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 
2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 
2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 
2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L), .Label = c("Non-waterlogged", 
"Waterlogged"), class = "factor"), P = c(12.1, 12.1, 12.1, 12.1, 
12.1, 12.1, 12.1, 12.1, 15.17, 15.17, 15.17, 15.17, 15.17, 15.17, 
15.17, 15.17, 18.24, 18.24, 18.24, 18.24, 18.24, 18.24, 18.24, 
18.24, 24.39, 24.39, 24.39, 24.39, 24.39, 24.39, 24.39, 24.39, 
48.35, 48.35, 48.35, 48.35, 48.35, 48.35, 48.35, 48.35, 12.1, 
12.1, 12.1, 12.1, 12.1, 12.1, 12.1, 12.1, 15.17, 15.17, 15.17, 
15.17, 15.17, 15.17, 15.17, 15.17, 18.24, 18.24, 18.24, 18.24, 
18.24, 18.24, 18.24, 18.24, 24.39, 24.39, 24.39, 24.39, 24.39, 
24.39, 24.39, 24.39, 48.35, 48.35, 48.35, 48.35, 48.35, 48.35, 
48.35, 48.35), form = c(2.81, 2.64, 2.59, 3.28, 3.18, 2.57, 2.9, 
3, 2.38, 2.72, 2.58, 2.73, 3.06, 3.01, 3.01, 2.77, 2.95, 2.36, 
2.91, 2.38, 3.33, 3.19, 3.17, 3.16, 3.16, 3.2, 2.58, 3.71, 3.11, 
2.7, 2.92, 1.93, 2.95, 2.57, 2.68, 2.48, 3.34, 2.75, 2.52, 1.88, 
1.19, 0.57, 0.64, 0.66, 1.13, 1.28, 0.85, 0.96, 1.34, 2.14, 0.63, 
1.27, 1.13, 0.64, 1.21, 1.95, 1.11, 0.91, 0.75, 0.63, 1.06, 1.07, 
1.05, 0.8, 1.41, 1.13, 0.75, 0.89, 1.98, 1.27, 1.01, 1, 1.16, 
0.64, 0.64, 1.02, 1.03, 1.13, 0.79, 0.6)), row.names = 41:120, class = "data.frame")

library(Rmisc)
library(ggplot2)

tglf3 <- summarySE(yar, measurevar="form", 
groupvars=c("P","cultivar","Waterlogging"),na.rm=TRUE)
pd <- position_dodge(0.5)

ggplot(tglf3,aes(x=P, y=form, colour=Waterlogging, shape=cultivar))+ 
  geom_errorbar(aes(ymin=form-se, ymax=form+se), width=.6,position=pd) +
  geom_point(size=3.5,position=pd) +
  geom_line(position=pd) +
  theme_bw() +
  theme(legend.position = 'top', legend.direction="vertical")

When I try to change the colour, this happens...

ggplot(tglf3,aes(x=P, y=form, colour=Waterlogging, shape=cultivar)) + 
  geom_errorbar(aes(ymin=form-se, ymax=form+se), colour="black", width=.6,position=pd) +
  geom_point(size=3.5,position=pd) +
  geom_line(position=pd) +
  theme_bw() +
  theme(legend.position = 'top', legend.direction="vertical")

The three factors are water-logging, cultivar and phosphorus. I have tried adding 'group=cultivar' which usually works when there are only two factors.

ggplot(tglf3,aes(x=P, y=form, colour=Waterlogging, shape=cultivar,group=cultivar)) + ...

回答1:

With the following code, you can have color and shape grouped in legend and have a unique legend shape for each category as in your example.

To have your legend in two columns, you can use guides.

ggplot(DF2, aes(x = P, y = form, 
                 shape = interaction(cultivar, Waterlogging), 
                 color = interaction(cultivar, Waterlogging),
                 group = interaction(cultivar, Waterlogging)))+
    geom_errorbar(aes(ymin=form-se, ymax=form+se),color = "black", width=.6, 
                  position = pd)+
    geom_point(size = 3.5)+
    geom_line()+
    theme_bw() +
    theme(legend.position = 'top', 
          legend.direction="vertical")+
    guides(color=guide_legend(ncol=2, title = "Legend"), 
           shape = guide_legend(ncol =2, title = "Legend"))

Does it answer your question ?

来源：https://stackoverflow.com/questions/59906833/moving-error-bars-in-a-line-graph-with-three-factors

标签

ggplot2

linegraph

errorbar