错误：
org.apache.phoenix.exception.PhoenixIOException: SYSTEM.CATALOG
at org.apache.phoenix.util.ServerUtil.parseServerException(ServerUtil.java:144)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.metaDataCoprocessorExec(ConnectionQueryServicesImpl.java:1379)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.metaDataCoprocessorExec(ConnectionQueryServicesImpl.java:1343)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.getTable(ConnectionQueryServicesImpl.java:1560)
at org.apache.phoenix.schema.MetaDataClient.updateCache(MetaDataClient.java:643)
at org.apache.phoenix.schema.MetaDataClient.updateCache(MetaDataClient.java:538)
at org.apache.phoenix.jdbc.PhoenixStatement$2.call(PhoenixStatement.java:428)
at org.apache.phoenix.jdbc.PhoenixStatement$2.call(PhoenixStatement.java:391)
at org.apache.phoenix.call.CallRunner.run(CallRunner.java:53)
at org.apache.phoenix.jdbc.PhoenixStatement.executeMutation(PhoenixStatement.java:389)
at org.apache.phoenix.jdbc.PhoenixStatement.executeMutation(PhoenixStatement.java:378)
at org.apache.phoenix.jdbc.PhoenixStatement.executeUpdate(PhoenixStatement.java:1806)
at org.apache.phoenix.query.ConnectionQueryServicesImpl$12.call(ConnectionQueryServicesImpl.java:2528)
at org.apache.phoenix.query.ConnectionQueryServicesImpl$12.call(ConnectionQueryServicesImpl.java:2491)
at org.apache.phoenix.util.PhoenixContextExecutor.call(PhoenixContextExecutor.java:76)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.init(ConnectionQueryServicesImpl.java:2491)
at org.apache.phoenix.jdbc.PhoenixDriver.getConnectionQueryServices(PhoenixDriver.java:255)
at org.apache.phoenix.jdbc.PhoenixEmbeddedDriver.createConnection(PhoenixEmbeddedDriver.java:150)
at org.apache.phoenix.jdbc.PhoenixDriver.connect(PhoenixDriver.java:221)
at sqlline.DatabaseConnection.connect(DatabaseConnection.java:157)
at sqlline.DatabaseConnection.getConnection(DatabaseConnection.java:203)
at sqlline.Commands.close(Commands.java:906)
at sqlline.Commands.closeall(Commands.java:880)
at sqlline.SqlLine.begin(SqlLine.java:714)
at sqlline.SqlLine.start(SqlLine.java:398)
at sqlline.SqlLine.main(SqlLine.java:291)
Caused by: org.apache.hadoop.hbase.TableNotFoundException: SYSTEM.CATALOG
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.locateRegionInMeta(ConnectionManager.java:1417)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.locateRegion(ConnectionManager.java:1211)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.locateRegion(ConnectionManager.java:1191)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.locateRegion(ConnectionManager.java:1148)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.getRegionLocation(ConnectionManager.java:983)
at org.apache.hadoop.hbase.client.HRegionLocator.getRegionLocation(HRegionLocator.java:83)
at org.apache.hadoop.hbase.client.HTable.getRegionLocation(HTable.java:571)
at org.apache.hadoop.hbase.client.HTable.getKeysAndRegionsInRange(HTable.java:787)
at org.apache.hadoop.hbase.client.HTable.getKeysAndRegionsInRange(HTable.java:757)
at org.apache.hadoop.hbase.client.HTable.getStartKeysInRange(HTable.java:1835)
at org.apache.hadoop.hbase.client.HTable.coprocessorService(HTable.java:1790)
at org.apache.hadoop.hbase.client.HTable.coprocessorService(HTable.java:1770)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.metaDataCoprocessorExec(ConnectionQueryServicesImpl.java:1362)
... 24 more
解决办法：
去zk里面删除SYSTEM.CATALOG表
bin/hbase zkcli 进入zk界面
再次报错：
ERROR] Terminal initialization failed; falling back to unsupported
java.lang.IncompatibleClassChangeError: Found class jline.Terminal, but interface was expected
at jline.TerminalFactory.create(TerminalFactory.java:101)
at jline.TerminalFactory.get(TerminalFactory.java:159)
at jline.console.ConsoleReader.<init>(ConsoleReader.java:227)
at jline.console.ConsoleReader.<init>(ConsoleReader.java:219)
at jline.console.ConsoleReader.<init>(ConsoleReader.java:207)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.zookeeper.ZooKeeperMain.run(ZooKeeperMain.java:311)
at org.apache.zookeeper.ZooKeeperMain.main(ZooKeeperMain.java:282)
at org.apache.hadoop.hbase.zookeeper.ZooKeeperMainServer.main(ZooKeeperMainServer.java:108)
JLine support is disabled
找到hbase conf下的hbase文件315行下添加红色的classpath：
elif [ "$COMMAND" = "zkcli" ] ; then
class="org.apache.hadoop.hbase.zookeeper.ZooKeeperMainServer"
CLASSPATH=`echo $CLASSPATH | sed 's/jruby-cloudera-1\.0\.0\.jar//g'`
之后重启hbase伪分布环境，之后再次进入zk的客户端不报错了，正常进入：
重新进入 zk界面
找到了这些表
rmr /hbase/table/SYSTEM.CATALOG
rmr /hbase/table/SYSTEM.SEQUENCE
rmr /hbase/table/SYSTEM.STATS
rmr /hbase/table/SYSTEM.FUNCTION
方法3：/bin/hbase clean --cleanAll
在执行上述命令之前：先关闭hbase（包括HMaster和regionServer）
3.重新启动hbase
4.通过 ./sqlline.py 进入phoenix，系统会自动创建Phoenix的系统表
来源：https://www.cnblogs.com/hejunhong/p/12159060.html