问题
When I tried to install packages on my work laptop, I got an error. I've been told that I have full privileges with the laptop, so there should be no blocks.
I think it might be something to do with the file path to the library where installed packages go? I'm using both the latest version of R and R Studio, 64-bit, and using Canada's U of T CRAN mirror site.
Here is what comes up when I try to install plyr with
install.packages("plyr")
also installing the dependency ‘Rcpp’ Packages which are only available in source form, and may need compilation of C/C++/Fortran: ‘Rcpp’ ‘plyr’
And when I try to install ggplot2, here is the long error message:
ERROR: dependency 'stringi' is not available for package 'stringr' * removing 'C:/RPackages/R-3.2.3/library/stringr' Warning in install.packages : running command '"C:/RPACKA~1/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\RPackages\R-3.2.3\library" C:\Users\MICHAE~1.COL\AppData\Local\Temp\RtmpGs24zA/downloaded_packages/stringr_1.0.0.tar.gz' had status 1 Warning in install.packages : installation of package ‘stringr’ had non-zero exit status ERROR: dependency 'colorspace' is not available for package 'munsell' * removing 'C:/RPackages/R-3.2.3/library/munsell' Warning in install.packages : running command '"C:/RPACKA~1/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\RPackages\R-3.2.3\library" C:\Users\MICHAE~1.COL\AppData\Local\Temp\RtmpGs24zA/downloaded_packages/munsell_0.4.3.tar.gz' had status 1 Warning in install.packages : installation of package ‘munsell’ had non-zero exit status ERROR: dependencies 'digest', 'plyr', 'reshape2', 'scales' are not available for package 'ggplot2' * removing 'C:/RPackages/R-3.2.3/library/ggplot2' Warning in install.packages : running command '"C:/RPACKA~1/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\RPackages\R-3.2.3\library" C:\Users\MICHAE~1.COL\AppData\Local\Temp\RtmpGs24zA/downloaded_packages/ggplot2_2.0.0.tar.gz' had status 1 Warning in install.packages : installation of package ‘ggplot2’ had non-zero exit status The downloaded source packages are in ‘C:\Users\michael.colangelo\AppData\Local\Temp\RtmpGs24zA\downloaded_packages’
What does "non-zero exit status" mean? Is it trying to find a library for the installation?> The appData file mentioned in the code doesn't seem to exist or I cannot access it. How do I change it to another local folder?
回答1:
A non-zero exit status means in this case that the system failed to install the package. There seem to be a number of unresolved dependencies in the installation process. You could try to resolve this by attempting to install the package using the option dependencies=TRUE; like this:
install.packages("ggplot2", dependencies=TRUE)
回答2:
i was struggling with the same problem, for a long time and mikes solution didnt help me either. I tried everything upto reinstalling R. Still didnt work. However the solution is quite simple in my case. In the Terminal dont run R as R but use:
sudo -i R
or change ownership of the r package folders, becaues if its owned by root you are not allowed to read or write in it.
回答3:
Several of my students have been having problems like this with R3.3.3 (Mac) and R3.5.0 (all). We found that installing devtools and loading packages from github helped get beyond the odd "non zero exit status" problems, e.g. to get the C50 package at https://github.com/topepo/C5.0:
require("devtools")
install_github("topepo/C5.0")
We tried all of the solutions listed on this page prior to this method finally working.
回答4:
RCpp must be compiled by Rtools. You should check the path of your Rtools.
By the way, on my computer (WIN10, R-3.5.1), Rtools must be installed at C:\Rtools. If I change the install location, R will not find it.
回答5:
My problem was fixed by giving me ownership permissions over the Resources/library folder.
The way I solved it, was to go to Recovery Mode (Press Command + R when booting), then go to Utilities > Terminal.
I temporarily disabled the Configuring System Integrity Protection with (WARNING: REMEMBER TO ENABLE IT AFTERWARDS):
csrutil disable
Went back to macOS, right click on the library folder > Get Info > Sharing & Permissions > Click on the lock and enter your admin password > and added myself to read/write.
Restart the mac, enter Recovery Mode again, go to the terminal, and enable the Integrity Protection
csrutil enable
Hope it helps, and please, remember to re-enable the csrutil, your system is very vulnerable in that state, so if you suspect you have some kind of malware, don't use this solution.
回答6:
Installing all of the tidyverse packages was the only thing that worked for me.
install.packages("tidyverse")
回答7:
I had the same problem and solved it by install g++ compiler
$ sudo apt install g++
来源：https://stackoverflow.com/questions/35666638/cant-access-user-library-in-r-non-zero-exit-status-warning