问题
I have a package in R (ROCR) that I need to load in my R environment. Upon loading the package, a set of messages are printed. This is ordinarily fine, but since the output of my R script is being used for further analysis I want to completely disable all of this output. How do I do that? Furthermore, I'd prefer to do it without having to modify ROCR at all, so that future users of this script don't have to do that either.
So far:
sink()
doesn't work here - redirecting both stdout and std err to/dev/null
does nothing for me.- Unsurprisingly,
options(warnings=-1)
does nothing either, since these are not warnings, per se, being printed.
Any thoughts?
回答1:
Just use suppressMessages()
around your library()
call:
edd@max:~$ R
R version 2.14.1 (2011-12-22)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-pc-linux-gnu (64-bit)
[...]
R> suppressMessages(library(ROCR))
R> # silently loaded
R> search()
[1] ".GlobalEnv" "package:ROCR" # it's really there
[3] "package:gplots" "package:KernSmooth"
[5] "package:grid" "package:caTools"
[7] "package:bitops" "package:gdata"
[9] "package:gtools" "package:stats"
[11] "package:graphics" "package:grDevices"
[13] "package:utils" "package:datasets"
[15] "package:methods" "Autoloads"
[17] "package:base"
R>
回答2:
Dirk's answer suppresses all messages and is not specific to messages that is generated while loading packages.
The more accurate solution to the asked question is:
suppressPackageStartupMessages(library(THE_PACKAGE_NAME))
A bit more detailed explanation can be found here
回答3:
library(ROCR, quietly = TRUE)
might be a more elegant option.
回答4:
Use suppressPackageStartupMessages, see the answer by @MehradMahmoudian. For completeness, adding examples of usage:
For one library, use suppressPackageStartupMessages(...)
, for example:
suppressPackageStartupMessages(library(ggplot2))
For multiple libraries, use suppressPackageStartupMessages({...})
, for example:
suppressPackageStartupMessages({
library(ggplot2)
library(ggdendro)
})
回答5:
By adding quietly = T
as shown below will solve the issue:
suppressWarnings(suppressMessages(library("dplyr", quietly = T)))
In case of multiple package you can use :
## specify the package names
PKGs <- c("affy","gcrma","readxl","ggplot2","lattice" )
and them use lapply as below:
lapply(PKGs, library, character.only = TRUE ,quietly = T)
来源:https://stackoverflow.com/questions/8681688/disable-messages-upon-loading-a-package