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Showing median value in grouped boxplot in R

由 拜拜、爱过 提交于 2019-12-13 07:23:01

问题


I have created boxplots using ggplot2 with this code.

plotgraph <- function(x, y, colour, min, max)
{
    plot1 <- ggplot(dims, aes(x = x, y = y, fill = Region)) +
        geom_boxplot()
    #plot1 <- plot1 + scale_x_discrete(name = "Blog Type")
    plot1 <- plot1 + labs(color='Region') + geom_hline(yintercept = 0, alpha = 0.4)
    plot1 <- plot1 + scale_y_continuous(breaks=c(seq(min,max,5)), limits = c(min, max))
    plot1 <- plot1 + labs(x="Blog Type", y="Dimension Score") + scale_fill_grey(start = 0.3, end = 0.7) + theme_grey()
    plot1 <- plot1 + theme(legend.justification = c(1, 1), legend.position = c(1, 1))
    return(plot1)
}
plot1 <- plotgraph (Blog, Dim1, Region, -30, 25)

A part of data I use is reproduced here.

Blog,Region,Dim1,Dim2,Dim3,Dim4
BlogsInd.,PK,-4.75,13.47,8.47,-1.29
BlogsInd.,PK,-5.69,6.08,1.51,-1.65
BlogsInd.,PK,-0.27,6.09,0.03,1.65
BlogsInd.,PK,-2.76,7.35,5.62,3.13
BlogsInd.,PK,-8.24,12.75,3.71,3.78
BlogsInd.,PK,-12.51,9.95,2.01,0.21
BlogsInd.,PK,-1.28,7.46,7.56,2.16
BlogsInd.,PK,0.95,13.63,3.01,3.35
BlogsNews,PK,-5.96,12.3,6.5,1.49
BlogsNews,PK,-8.81,7.47,4.76,1.98
BlogsNews,PK,-8.46,8.24,-1.07,5.09
BlogsNews,PK,-6.15,0.9,-3.09,4.94
BlogsNews,PK,-13.98,10.6,4.75,1.26
BlogsNews,PK,-16.43,14.49,4.08,9.91
BlogsNews,PK,-4.09,9.88,-2.79,5.58
BlogsNews,PK,-11.06,16.21,4.27,8.66
BlogsNews,PK,-9.04,6.63,-0.18,5.95
BlogsNews,PK,-8.56,7.7,0.71,4.69
BlogsNews,PK,-8.13,7.26,-1.13,0.26
BlogsNews,PK,-14.46,-1.34,-1.17,14.57
BlogsNews,PK,-4.21,2.18,3.79,1.26
BlogsNews,PK,-4.96,-2.99,3.39,2.47
BlogsNews,PK,-5.48,0.65,5.31,6.08
BlogsNews,PK,-4.53,-2.95,-7.79,-0.81
BlogsNews,PK,6.31,-9.89,-5.78,-5.13
BlogsTech,PK,-11.16,8.72,-5.53,8.86
BlogsTech,PK,-1.27,5.56,-3.92,-2.72
BlogsTech,PK,-11.49,0.26,-1.48,7.09
BlogsTech,PK,-0.9,-1.2,-2.03,-7.02
BlogsTech,PK,-12.27,-0.07,5.04,8.8
BlogsTech,PK,6.85,1.27,-11.95,-10.79
BlogsTech,PK,-5.21,-0.89,-6,-2.4
BlogsTech,PK,-1.06,-4.8,-8.62,-2.42
BlogsTech,PK,-2.6,-4.58,-2.07,-3.25
BlogsTech,PK,-0.95,2,-2.2,-3.46
BlogsTech,PK,-0.82,7.94,-4.95,-5.63
BlogsTech,PK,-7.65,-5.59,-3.28,-0.54
BlogsTech,PK,0.64,-1.65,-2.36,-2.68
BlogsTech,PK,-2.25,-3,-3.92,-4.87
BlogsTech,PK,-1.58,-1.42,-0.38,-5.15
Columns,PK,-5.73,3.26,0.81,-0.55
Columns,PK,0.37,-0.37,-0.28,-1.56
Columns,PK,-5.46,-4.28,2.61,1.29
Columns,PK,-3.48,2.38,12.87,3.73
Columns,PK,0.88,-2.24,-1.74,3.65
Columns,PK,-2.11,4.51,8.95,2.47
Columns,PK,-10.13,10.73,9.47,-0.47
Columns,PK,-2.08,1.04,0.11,0.6
Columns,PK,-4.33,5.65,2,-0.77
Columns,PK,1.09,-0.24,-0.92,-0.17
Columns,PK,-4.23,-4.01,-2.32,6.26
Columns,PK,-1.46,-1.53,9.83,5.73
Columns,PK,9.37,-1.32,1.27,-4.12
Columns,PK,5.84,-2.42,-5.21,1.07
Columns,PK,8.21,-9.36,-5.87,-3.21
Columns,PK,7.34,-7.3,-2.94,-5.86
Columns,PK,1.83,-2.77,1.47,-4.02
BlogsInd.,PK,14.39,-0.55,-5.42,-4.7
BlogsInd.,US,22.02,-1.39,2.5,-3.12
BlogsInd.,US,4.83,-3.58,5.34,9.22
BlogsInd.,US,-3.24,2.83,-5.3,-2.07
BlogsInd.,US,-5.69,15.17,-14.27,-1.62
BlogsInd.,US,-22.92,4.1,5.79,-3.88
BlogsNews,US,0.41,-2.03,-6.5,2.81
BlogsNews,US,-4.42,8.49,-8.04,2.04
BlogsNews,US,-10.72,-4.3,3.75,11.74
BlogsNews,US,-11.29,2.01,0.67,8.9
BlogsNews,US,-2.89,0.08,-1.59,7.06
BlogsNews,US,-7.59,8.51,3.02,12.33
BlogsNews,US,-7.45,23.51,2.79,0.48
BlogsNews,US,-12.49,15.79,-9.86,18.29
BlogsTech,US,-11.59,6.38,11.79,-7.28
BlogsTech,US,-4.6,4.12,7.46,3.36
BlogsTech,US,-22.83,2.54,10.7,5.09
BlogsTech,US,-4.83,3.37,-8.12,-0.9
BlogsTech,US,-14.76,29.21,6.23,9.33
Columns,US,-15.93,12.85,19.47,-0.88
Columns,US,-2.78,-1.52,8.16,0.24
Columns,US,-16.39,13.08,11.07,7.56

Even though I have tried to add detailed scale on y-axis, it is hard for me to pinpoint exact median score for each boxplot. So I need to print median value within each boxplot. There was another answer available (for faceted boxplot) which does not work for me as the printed values are not within the boxes but jammed together in the middle. It will be great to be able to print them within (middle and above the median line of) boxplots. Thanks for your help. Edit: I make a grouped graph as below. Add


回答1:


library(dplyr)
dims=dims%>%
  group_by(Blog,Region)%>%
  mutate(med=median(Dim1))
plotgraph <- function(x, y, colour, min, max)
{
  plot1 <- ggplot(dims, aes(x = x, y = y, fill = Region)) +
    geom_boxplot()+
    labs(color='Region') + 
    geom_hline(yintercept = 0, alpha = 0.4)+
    scale_y_continuous(breaks=c(seq(min,max,5)), limits = c(min, max))+
    labs(x="Blog Type", y="Dimension Score") + scale_fill_grey(start = 0.3, end = 0.7) + 
    theme_grey()+
    theme(legend.justification = c(1, 1), legend.position = c(1, 1))+
    geom_text(aes(y = med,x=x, label = round(med,2)),position=position_dodge(width = 0.8),size = 3, vjust = -0.5,colour="blue")
  return(plot1)
}
plot1 <- plotgraph (Blog, Dim1, Region, -30, 25)

Which gives (the text colour can be tweaked to something less tacky):

Note: You should consider using non-standard evaluation in your function rather than having it require the use of attach()

Edit:
One liner, not as clean I wanted it to be since I ran into problems with dplyr not properly aggregating the data even though it says the grouping was performed. This function assume the dataframe is always called dims

library(ggplot2)
library(reshape2)
plotgraph <- function(x, y, colour, min, max)
{
  plot1 <- ggplot(dims, aes_string(x = x, y = y, fill = colour)) +
    geom_boxplot()+
    labs(color=colour) + 
    geom_hline(yintercept = 0, alpha = 0.4)+
    scale_y_continuous(breaks=c(seq(min,max,5)), limits = c(min, max))+
    labs(x="Blog Type", y="Dimension Score") +
    scale_fill_grey(start = 0.3, end = 0.7) + 
    theme_grey()+
    theme(legend.justification = c(1, 1), legend.position = c(1, 1))+
    geom_text(data= melt(with(dims, tapply(eval(parse(text=y)),list(eval(parse(text=x)),eval(parse(text=colour))), median)),varnames=c("Blog","Region"),value.name="med"),
              aes_string(y = "med",x=x, label = "med"),position=position_dodge(width = 0.8),size = 3, vjust = -0.5,colour="blue")
  return(plot1)
}
plot1 <- plotgraph ("Blog", "Dim1", "Region", -30, 25)



回答2:


Assuming that Blog is your dataframe, the following should work:

min <- -30 
max <- 25
meds <- aggregate(Dim1~Region, Blog, median)
plot1 <- ggplot(Blog, aes(x = Region, y = Dim1, fill = Region)) +
  geom_boxplot()
plot1 <- plot1 + labs(color='Region') + geom_hline(yintercept = 0, alpha = 0.4)
plot1 <- plot1 + scale_y_continuous(breaks=c(seq(min,max,5)), limits = c(min, max))
plot1 <- plot1 + labs(x="Blog Type", y="Dimension Score") + scale_fill_grey(start = 0.3, end = 0.7) + theme_grey()
plot1 + theme(legend.justification = c(1, 1), legend.position = c(1, 1)) +
  geom_text(data = meds, aes(y = Dim1, label = round(Dim1,2)),size = 5, vjust = -0.5, color='white')



来源：https://stackoverflow.com/questions/41914505/showing-median-value-in-grouped-boxplot-in-r

标签
r
boxplot
median
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