问题
I have installed R 3.3.0 on a centos 5.2 server, and am trying to install the packages I need to run a shiny
app; one of the packages is Hmisc
and causing an error.
Unfortunately, I have no idea how to proceed. Could someone advise please? Do I need to add additional libraries via yum install
?
Many thanks
gcc: /builddir/build/BUILD/R-3.3.0/zlib-1.2.8/target/usr/lib64/libz.a: No such file or directory
gcc: /builddir/build/BUILD/R-3.3.0/bzip2-1.0.6/target/usr/lib64/libbz2.a: No such file or directory
gcc: /builddir/build/BUILD/R-3.3.0/xz-5.2.2/target/usr/lib64/liblzma.a: No such file or directory
gcc: /builddir/build/BUILD/R-3.3.0/pcre-8.38/target/usr/lib64/libpcre.a: No such file or directory
gcc: /builddir/build/BUILD/R-3.3.0/curl-7.48.0/target/usr/lib64/libcurl.a: No such file or directory
> sessionInfo()
R version 3.3.0 (2016-05-03)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS release 6.7 (Final)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.3.0
回答1:
This worked for me with the same issue, it's a hack but still worked.
wget http://zlib.net/zlib-1.2.8.tar.gz
./configure ; make ; make install
mkdir -p /builddir/build/BUILD/R-3.3.0/zlib-1.2.8/target/usr/lib64/
ln -s /usr/local/lib/libz.a /builddir/build/BUILD/R-3.3.0/zlib-1.2.8/target/usr/lib64/libz.a
wget http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz
make ; make install
mkdir -p /builddir/build/BUILD/R-3.3.0/bzip2-1.0.6/target/usr/lib64/
ln -s /usr/local/lib/libbz2.a /builddir/build/BUILD/R-3.3.0/bzip2-1.0.6/target/usr/lib64/libbz2.a
wget http://tukaani.org/xz/xz-5.2.2.tar.gz
./configure ; make ; make install
mkdir -p /builddir/build/BUILD/R-3.3.0/xz-5.2.2/target/usr/lib64/
ln -s /usr/local/lib/liblzma.a /builddir/build/BUILD/R-3.3.0/xz-5.2.2/target/usr/lib64/liblzma.a
wget http://downloads.sourceforge.net/project/pcre/pcre/8.38/pcre-8.38.tar.gz
./configure ; make ; make install
mkdir -p /builddir/build/BUILD/R-3.3.0/pcre-8.38/target/usr/lib64/
ln -s /usr/local/lib/libpcre.a /builddir/build/BUILD/R-3.3.0/pcre-8.38/target/usr/lib64/libpcre.a
wget https://curl.haxx.se/download/curl-7.48.0.tar.gz
./configure ; make ; make install
mkdir -p /builddir/build/BUILD/R-3.3.0/curl-7.48.0/target/usr/lib64/
ln -s /usr/local/lib/libcurl.a /builddir/build/BUILD/R-3.3.0/curl-7.48.0/target/usr/lib64/libcurl.a
yum install libidn-devel.i686 libidn-devel.x86_64 libssh-devel.x86_64 libssh-devel.i686 libssh2-devel.i686 libssh2-devel.x86_64 openldap-devel.i686 openldap-devel.x86_64
R
install.packages("Hmisc")
> library(Hmisc)
Loading required package: lattice
Loading required package: survival
Loading required package: Formula
Loading required package: ggplot2
Attaching package: ‘Hmisc’
The following objects are masked from ‘package:base’:
format.pval, round.POSIXt, trunc.POSIXt, units
>
来源:https://stackoverflow.com/questions/37432130/error-installing-hmisc-in-r-3-3-0-on-centos-6-7