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How to find the optimal point for DBSCAN() parameters in R

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问题 How to find the optimal point and appropriate amount for DBSCAN() parameters(eps,Minpts)? DBSCAN() from package fpc implements the DBSCAN(Density based clustering) clustering method. 回答1: You can find strategies for choosing minPts and epsilon discussed in the original DBSCAN paper: Ester, M., Kriegel, H. P., Sander, J., & Xu, X. (1996, August). A density-based algorithm for discovering clusters in large spatial databases with noise. In KDD (Vol. 96, No. 34, pp. 226-231). Also read up on some

I am having a hard time understanding the concept of Ordering in OPTICS Clustering algorithm

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问题 I am having a hard time understanding the concept of Ordering in OPTICS Clustering algorithm. I Would be grateful if someone gives a logical and intuitive explanation of the ordering and also explain what res$order does in the following code and what is the reahability plot(which can be obtained by the command 'plot(res)'). library(dbscan) set.seed(2) n <- 400 x <- cbind( x = runif(4, 0, 1) + rnorm(n, sd=0.1), y = runif(4, 0, 1) + rnorm(n, sd=0.1) ) plot(x, col=rep(1:4, time = 100)) res <-

3. DBSCAN

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DBSCAN——一种基于密度的聚类算法 (Density Based Spatial Clustering of Applications with Noise) 可以在带有“噪音”的空间数据库中发现任意形状的聚类。基于密度的聚类寻找被低密度区域分离的高密度区域。DBSCAN是一种简单的、有效的基于密度的聚类算法。核心点（core point）：这些点在基于密度的簇内部，点的邻域由距离函数和用户指定的距离参数 Eps 决定。核心点的定义：如果该点的给定邻域内的点的个数超过给定的阈值 Minpts,其中 Minpts 也是一个用户指定的参数。 Eps是给定的半径内的点数，Minpts是基于密度的簇内部点的数量阈值。边界点（border point）：不是核心点，但它落在某个核心点的邻域内。噪声点（noise point）：噪声点既不是核心点也不是边界点。 DBSCAN 围绕核心点、边界点、噪声点三个实体将所有的点标记成核心点、边界点、噪声点，删除噪声点为距离在 Eps 之内的所有核心点之间赋予一条边每组连通的核心点形成一个簇。将每个边界点指派到一个与之关联的核心点的簇中（与下面实例结合理解） DBSCAN的复杂度： DBSCAN 的基本时间复杂度是 O( m * 找出 Eps 邻域中的点所需要的时间），m 是点的个数。最坏情况下，时间复杂度是O(m 2

ELKI: Running DBSCAN on custom Objects in Java

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问题 I'm trying to use ELKI from within JAVA to run DBSCAN. For testing I used a FileBasedDatabaseConnection. Now I would like to run DBSCAN with my custom Objects as parameters. My objects have the following structure: public class MyObject { private Long id; private Float param1; private Float param2; // ... and more parameters as well as getters and setters } I'd like to run DBSCAN within ELKI using a List<MyObject> as database, but only some of the parameters should be taken into account (e.g.

eps estimation for DBSCAN by not using the already suggested algorithm in the Original research paper

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问题 I have to implement DBSCAN using python, and the epsilon estimation has been posing problems as the already suggested method in the original research paper assumes blob like distribution of the dataset, where as in my case it is more of a cure fittable data with jumps at some intervals. The jumps cause the DBSCAN to form different clusters of various datasets in the intervals between jumps(which is good enough for me), but the epsilon calculation dynamically for different datasets does not

Use sklearn DBSCAN model to classify new entries

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问题 I have a huge "dynamic" dataset and I'm trying to find interesting clusters on it. After running a lot of different unsupervised clustering algorithms I have found a configuration of DBSCAN which gives coherent results. I would like to extrapolate the model that DBSCAN creates according to my test data to apply it to other datasets, but without re-running the algorithm. I cannot run the algorithm over the whole dataset cause it would run out of memory, and the model might not make sense to me

In scikit-learn, can DBSCAN use sparse matrix?

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问题 I got Memory Error when I was running dbscan algorithm of scikit. My data is about 20000*10000, it's a binary matrix. (Maybe it's not suitable to use DBSCAN with such a matrix. I'm a beginner of machine learning. I just want to find a cluster method which don't need an initial cluster number) Anyway I found sparse matrix and feature extraction of scikit. http://scikit-learn.org/dev/modules/feature_extraction.html http://docs.scipy.org/doc/scipy/reference/sparse.html But I still have no idea

How to apply DBSCAN algorithm on grouping of similar url [closed]

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问题 It's difficult to tell what is being asked here. This question is ambiguous, vague, incomplete, overly broad, or rhetorical and cannot be reasonably answered in its current form. For help clarifying this question so that it can be reopened, visit the help center. Closed 7 years ago . how to group similar url using the DBSCAN algorithm. I have seen many datasets but none were on url , I want to take similar type of urls and group it together. Here i am not able to know distance (eps) and

使用DBSCAN 来进行聚类运算

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使用DBSCAN 来进行聚类运算 DBSCAN（Density-Based Spatial Clustering of Applications with Noise，具有噪声的基于密度的聚类方法）是一种基于密度的空间聚类算法。该算法将具有足够密度的区域划分为簇，并在具有噪声的空间数据库中发现任意形状的簇，它将簇定义为密度相连的点的最大集合。该算法是最常用的一种聚类方法[1,2]。该算法将具有足够密度区域作为距离中心，不断生长该区域,算法基于一个事实：一个聚类可以由其中的任何核心对象唯一确定[4]。该算法利用基于密度的聚类的概念，即要求聚类空间中的一定区域内所包含对象（点或其他空间对象）的数目不小于某一给定阈值。该方法能在具有噪声的空间数据库中发现任意形状的簇，可将密度足够大的相邻区域连接，能有效处理异常数据，主要用于对空间数据的聚类，优缺点总结如下[3,4]: from sklearn import datasets from sklearn . preprocessing import StandardScaler from sklearn . cluster import DBSCAN iris = datasets . load_iris ( ) features = iris . data scaler = StandardScaler ( )

Choosing eps and minpts for DBSCAN (R)?

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问题 I've been searching for an answer for this question for quite a while, so I'm hoping someone can help me. I'm using dbscan from the fpc library in R. For example, I am looking at the USArrests data set and am using dbscan on it as follows: library(fpc) ds <- dbscan(USArrests,eps=20) Choosing eps was merely by trial and error in this case. However I am wondering if there is a function or code available to automate the choice of the best eps/minpts. I know some books recommend producing a plot

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