Snakemake: confusion on how to access config files properly
问题 This question follows on from a question I asked previously and it regards understanding how to access config files correctly using Snakemake. I have a specific problem I need to address which I'll ask first and a general problem understanding how indexing works which I'll ask second. I'm using snakemake to run and ATAC-seq pipeline from Alignment/QC through to motif analysis. A: Specific Question I'm trying to add a rule called trim_galore_pe to trim adapters from my fastq files before