Extract the labels attribute from “labeled” tibble columns from a haven import from Stata

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长发绾君心
长发绾君心 2021-02-02 16:24

Hadley Wickham\'s haven package, applied to a Stata file, returns a tibble with many columns of type \"labeled\". You can see these with str(), e.g.:



        
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  • 2021-02-02 16:55

    I'm going to take a go at answering this one, though my code isn't very pretty.

    First I make a function to extract a named attribute from a single column.

    ColAttr <- function(x, attrC, ifIsNull) {
    # Returns column attribute named in attrC, if present, else isNullC.
      atr <- attr(x, attrC, exact = TRUE)
      atr <- if (is.null(atr)) {ifIsNull} else {atr}
      atr
    }
    

    Then a function to lapply it to all the columns:

    AtribLst <- function(df, attrC, isNullC){
    # Returns list of values of the col attribute attrC, if present, else isNullC
      lapply(df, ColAttr, attrC=attrC, ifIsNull=isNullC)
    }
    

    Finally I run it for each attribute.

    stub93 <- AtribLst(cps_00093.df, attrC="label", isNullC=NA)
    
    labels93 <- AtribLst(cps_00093.df, attrC="labels", isNullC=NA)
    labels93 <- labels93[!is.na(labels93)]
    

    All the columns have a "label" attribute, but only some are of type "labeled" and so have a "labels" attribute. The labels attribute is named, where the labels match values of the data and the names tell you what those values signify.

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  • 2021-02-02 17:03

    Jumping off @omar-waslow answer above, but adding the use of attr_getter.

    If the data (some_df) is imported using read_dta in the haven package, then each column in the tibble has an attr called "label". So we split up the dataframe, going column by column. This creates a two column dataframe which can be joined back (after pivot_longer, for example).

    library(tidyverse)
    label_lookup_map <- tibble(
       col_name = some_df %>% names(),
       labels = some_df %>% map_chr(attr_getter("label"))
    )
    
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  • 2021-02-02 17:16

    The original question asks how 'to extract the values of the labels attribute to a list.' A solution to the main question follows (assuming some_df is imported via haven and has label attributes):

    library(purrr)
    n <- ncol(some_df)
    labels_list <- map(1:n, function(x) attr(some_df[[x]], "label") )
    
    # if a vector of character strings is preferable
    labels_vector <- map_chr(1:n, function(x) attr(some_df[[x]], "label") )
    
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