It might help to describe what problem you are trying to solve. There are a lot of "server-side" JS implementations that fill various needs. An there also several "server" platforms built around these implementations. I wrote one implementation on top of Rhino and Java Servlets, called Myna. Myna is for web applications, and I detailed some of its advantages in another question.
Are you trying to deploy web applications? Are you trying to script existing code? Does your code need to start quickly from a commandline, or is it going to be implemented as a daemon?
There are currently no clear winners in this space that do all of these things well, but there are good choices for specific needs.