I would like to disable keyboard shortcuts Command-W and Command-Q in Mac OS X 10.8 Mountain Lion.
This is because they inter
A solution that may work for factory hotkeys in individual apps which conflict with your desired assignment:
Use the built-in hotkey management:
System Preferences | Keyboard | Shortcuts | App Shortcuts
...to map the pre-existing to some hard-to-hit keyboard combination (like Cmd-Opt-Shift-backslash). This will free-up the old key combination for assignment.