The items in the list you presented are really situation dependent - they will vary from application to application. Some applications will need a save button, some won't. Some conditions will warrant a modal dialog box, some won't.
My top rule for designing a usable interface: Follow existing UI conventions. Nothing confuses a user more than a UI that doesn't work like anything they've ever used. Lotus Notes has one of the worst user interfaces ever created, and it is almost entirely because they went against common UI conventions with just about everything that they did.
If you're questioning how you should design a certain piece of your UI, think of a few standard/well-known applications that provide similar functionality and see how they do it.