citing references in a rmd file & error in pandoc-citeproc.exe

Question

This is my first time that I want to use citations in my rmd file and I don\'t know how can I do it exactly. I converted my rmd file to pdf document, but I have problem in g

Answer 1

Perhaps you need either to place a bibliography.bib file into your working directory or list your bibliography into the head, e.g. for bibliography:

Write a bibliography.bib file manually in editor or with a program like JabRef. There are also ways to autogenerate with e.g. Zotero:

% Encoding: UTF-8
    @article{csardi2006,
      author  = {G, Csardi and T, Nepusz},
      title   = {The igraph software package for complex network research},
      journal = {InterJournal, Complex Systems},
      year    = {2006},
      url     = {http://igraph.org},
    }
    @article{...}
    @article{...}

Save it into your working directory as "bibliography.bib".

The YAML metadata with bibliography:

---
title: "Context"
author: "Minoo"
date: "June 13, 2017"
output:
  pdf_document: default
  html_document: default
bibliography: bibliography.bib
---

Or YAML metadata with inclusion of references, e.g. for quick papers:

---
title: "Context"
author: "Minoo"
date: "June 13, 2017"
output:
  pdf_document: default
  html_document: default
references:
- id: csardi2006
  author:
  - family: Csardi
    given: G.
  - family: Nepusz
    given: T.
  publisher: InterJournal, Complex Systems
  title: The igraph software package for complex network research
  type: article-journal
  issued:
    year: 2006
---

Text section of RMD:

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

## Text

Lorem ipsum dolor sit amet [@csardi2006], consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam

## Biblio