I\'m currently working with an Atmel SAM3X8 ARM microcontroller that features a dual banked 2 x 256KB flash memory. I\'m trying to implement a firmware update feature, that
I had the same issue (see here: Atmel SAM3X8E dual bank switching for booting different behaviour).
After some more research I found an Application Note (Link: http://ww1.microchip.com/downloads/en/AppNotes/Atmel-42141-SAM-AT02333-Safe-and-Secure-Bootloader-Implementation-for-SAM3-4_Application-Note.pdf) which explains the boot behaviour of the SAM3X in a more clear way. The problem is that the datasheet is a bit misleading (at least I was confused too). The SAM3X has no ability to remap the the Flash banks. The booting behaviour is a bit different (see the picture in the link, it's a snipped from the Application note, page 33/34): Booting behaviour SAM3X
Picture 3-9 shows the SAM3X's behaviour at the boot-up. The GPNVM bits 1 and 2 just determine which memory section (ROM/Flash0/Flash1) is mirrored to the boot memory (located at 0x00000000). The mapping of the Flash banks is not changed. Therefore Flash0 still is mapped to 0x00080000 and Flash1 to 0x000C0000).
As the Application Note states some other Atmel microcontrollers are able to really remap the Flash banks (e.g. SAM3SD8 and SAM4SD32/16). These processors change the location of the Flash banks as you can see in picture 3-10.
To be able to update your firmware it is therefore necessary to implement some kind of bootloader. I implemented one by myself and was able to update my firmware even without using the GPNVM bits at all. I also opend a support ticket at Microchip to clarify the booting behaviour. When I receive an answer I hope to tell you more.
EDIT:
Here's the answer from the Microchip support:
Setting the GPNVM2 bit in SAM3X will merely make the CPU 'jump to' or start from flash bank 1 i.e. 0xC0000. No actual swap of memory addresses will take place.
To use flash bank 1, you will need to change the linker file (flash.ld) to reflect the flash start address 0xC0000.
For flash bank 0 application, change: rom (rx) : ORIGIN = 0x00080000, LENGTH = 0x00080000 /* Flash, 512K / to: rom (rx) : ORIGIN = 0x00080000, LENGTH = 0x00040000 / Flash, 256K */
For flash bank 1 application, change: rom (rx) : ORIGIN = 0x00080000, LENGTH = 0x00080000 /* Flash, 512K / to: rom (rx) : ORIGIN = 0x000C0000, LENGTH = 0x00040000 / Flash, 256K */
If this is not done, the reset handler in the flash 1 application will point to an address in the flash 0 application. So, although code will start execution in flash 1 (if GPNVM2 is set), it will jump back to the flash 0 application. The errata stating the 64kb limitation can be ignored.
Therefore the Application Note is right and no actual change of the mmory mapping is performed.
Cheers Lukas