Pandas combine multiple csv files

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北海茫月
北海茫月 2021-01-16 05:05

I have multiple csv files that I would like to combine into one df.

They are all in this general format, with two index columns:

                             


        
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  • 2021-01-16 05:45

    A simple way:

    Creating a list with the names of csvs:

    files=listdir()
    csvs=list()
    for file in files:
        if file.endswith(".csv"):
            csvs.append(file)
    

    concatenate the csvs:

    data=pd.DataFrame()
    for i in csvs:
        table=pd.read_csv(i)
        data=pd.concat([data,table])
    
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  • 2021-01-16 05:54

    I think you need concat instead merge:

    df = pd.concat([pd.read_csv(f, index_col=[0,1]) for f in files])
    
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  • 2021-01-16 06:08

    You can try the following. I made some changes to the DataFrame combining logic

    import os
    import pandas as pd
    import glob
    
    files = glob.glob(r'2017-12-05\Aggregated\*.csv')   //folder which contains all the csv files
    
    df = reduce(lambda df1,df2: pd.merge(df1,df2,on='id',how='outer'),[pd.read_csv(f, index_col=[0,1])for f in files] )
    
    df.to_csv(r'\merged.csv')
    
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