Edgelist within pandas dataframe to visualise using networkx

Question

I am having difficulties in representing a dataframe as a network using networkx. The problem seems to be related to the size of dataframe, or, to better explaining, to the

Answer 1

The issue you're facing is because some of the items in your data are duplicated. To solve it, you need to use drop_duplicates in the relevant places:

df["color"] = "blue"
df.loc[df.Src.isin(["x.serm.cool", "cdc.fre.gh"]), "color"] = "green"
df["Dst"] = df.Dst.apply(lambda x: x[1:-1].split(","))
df = df.explode("Dst").drop_duplicates()
G = nx.from_pandas_edgelist(df, 'Src', 'Dst')

colors = df[["Src", "color"]].drop_duplicates()["color"]
nx.draw(G, node_color = colors)

The output: