I am trying to use plink as an ssh alternative on windows, but I am finding that when plink connects to a remote linux machine, it does not source .bash_profile or .bashrc.<
If you simply connect to a remote host via ssh or plink, it will start the login account's default shell. If that shell is bash, bash will automatically source .bash_profile.
If you connect to a remote host via ssh or plink asking for a command to be executed, ssh will try to execute just that command.
What you want to achieve can be done by using a ForcedCommand. See also here:
Set the forced command to be a script that does 2 things:
The accepted answer helped me solve the same problem using plink. Here is a bit more detail that may help people in future:
When a ssh connection is made to run a single command using plink, bash is not invoked as an "interactive login shell", so it doesn't run /etc/profile, ~/.bash_profile, ~/.bash_login, or ~/.profile (see the bash manual pages).
For my purposes, I needed ~/.profile to run prior to the command passed in the plink command line.
A forced command can be added to the authorized_keys file for that key (see the sshd manual pages). A forced command (e.g. to run ~/.profile) stops it running the command specified by plink, so to get it to do both, the forced command should be to execute a script that runs .profile then the original plink command. The latter is stored in an environment variable $SSH_ORIGINAL_COMMAND so your script can do
source .profile
$SSH_ORIGINAL_COMMAND
and you specify the script in the ~/.ssh/authorized_keys file as follows, before the key, on the same line:
command="source forced_command.script" ssh-rsa A3AABzaC1yc...