Non-linear axes for imshow in matplotlib

Question

I am generating 2D arrays on log-spaced axes (for instance, the x pixel coordinates are generated using logspace(log10(0.95), log10(2.08), n).

I want to

Answer 1

In my view, it is better to use pcolor and regular (non-converted) x and y values. pcolor gives you more flexibility and regular x and y axis are less confusing.

import pylab as plt
import numpy as np
from matplotlib.colors import LogNorm
from matplotlib.ticker import LogFormatterMathtext

x=np.logspace(1, 3, 6)
y=np.logspace(0, 2,3)
X,Y=np.meshgrid(x,y)
z = np.logspace(np.log10(10), np.log10(1000), 5)
Z=np.vstack((z,z))

im = plt.pcolor(X,Y,Z, cmap='gray', norm=LogNorm())
plt.axvline(100, color='red')

plt.xscale('log')
plt.yscale('log')

plt.colorbar(im, orientation='horizontal',format=LogFormatterMathtext())
plt.show()

As pcolor is slow, a faster solution is to use pcolormesh instead.

im = plt.pcolormesh(X,Y,Z, cmap='gray', norm=LogNorm())

Answer 2

Actually, it works fine. I'm confused.

Previously I was getting errors about "Images are not supported on non-linear axes" which is why I asked this question. But now when I try it, it works:

import matplotlib.pyplot as plt
import numpy as np

x = np.logspace(1, 3, 5)
y = np.linspace(0, 2, 3)
z = np.linspace(0, 1, 4)
Z = np.vstack((z, z))

plt.imshow(Z, extent=[10, 1000, 0, 1], cmap='gray')
plt.xscale('log')

plt.axvline(100, color='red')

plt.show()

This is better than pcolor() and pcolormesh() because

1. it's not insanely slow and
2. is interpolated nicely without misleading artifacts when the image is not shown at native resolution.