how to compile lapack so that it can be used correctly during installation of octave?

Question

I\'m trying to install the latest octave 3.8.1 from source in a cluster running redhat+IBM LSF. I don\'t have write access to anywhere else except my own home dir, that\'s w

Answer 1

I would suggest using OpenBLAS.

> git clone https://github.com/xianyi/OpenBLAS.git
> make
> make make --PREFIX=INSTALL_DIR install

move the librabries from OpenBLAS to /usr/lib64

> cp /path/to/OpenBLAS/lib/* /usr/lib64/

then go to the octave installation path and run

> "your specific flags" ./configure "your specific arguments" --with-blas="-lopenblas"

Answer 2

Just compiled the lapack shared lib on my boss's beast... Here's a link which almost did it right. I made some changes:

(1) Adding -fPIC to

OPTS & NOOPT in make.inc

(2) Change the names in make.inc to .so

BLASLIB = ../../libblas.so

LAPACKLIB = ../liblapack.so

(3) In ./SRC, change the Makefile from

../$(LAPACKLIB): $(ALLOBJ)
    $(ARCH) $(ARCHFLAGS) $@ $(ALLOBJ)
    $(RANLIB) $@

to

../$(LAPACKLIB): $(ALLOBJ)
    $(LOADER) $(LOADOPTS) -shared -Wl,-soname,liblapack.so -o $@ $(ALLOBJ) ../libblas.so

Cuz lapack is calling blas, if you miss the very last part, your liblapack.so will fail! You need to LINK liblapack.so against libblas.so ( libatlas.so is also OK). You can use "ldd liblapack.so" to check its dependency. If you see libblas.so in there, pretty much you did it right.

(4) In ./BLAS/SRC, change the Makefile from

$(BLASLIB): $(ALLOBJ)
$(ARCH) $(ARCHFLAGS) $@ $(ALLOBJ)
$(RANLIB) $@

to

$(BLASLIB): $(ALLOBJ)
$(LOADER) $(LOADOPTS) -z muldefs -shared -Wl,-soname,libblas.so -o $@ $(ALLOBJ)

(5) I don't need libtmg.so so that I didn't change it... Run

make blaslib 

Then

make lapacklib

You will have both of them compiled. I check the liblapack.so with building a numpy on it and Python ctypes.cdll loading. All work for me to solve eigenvalues and eigenvectors... So it should be fine...

(6) YOU MAY NEED TO SET UP LD_LIBRARY_PATH to where you keep your library files. google it... If not set by admin, then

export LD_LIBRARY_PATH=path-to-lib

If already set, then

export LD_LIBRARY_PATH=path-to-lib:$LD_LIBRARY_PATH

to overwrite your default libs.

So that you won't have ld linking errors. Good luck!!

In lapack-3.7.0, there are redundant lines in the SRC/Makefile. Simply deleting them will solve your error.