I have to create a Java EE application which converts large documents into different formats. Each conversion takes between 10 seconds and 2 minutes. The SOAP requests will
Since this almost all done server-side, there isn't much a client can do besides poll the server somehow for updates on the status.
#1 is OK, but users get impatient really fast. "A few minutes" is a bit too long for most people. You'd need HTTP Streaming to implement #3, but I think that's overkill.
I would just go with #2.
For 3 the server should return a unique ID back to the client and using that ID the client has to ask the server the result at a later time