I have a situation where I have a few cygwin commands which I wish to be run in Windows command line e.g.
chmod 777 /home/administrator/*
C
One way to do this is to launch windows command prompt from a batch file, then, in there, call the shell script which has the command that you want to run.
batchfile-for-cygwin.bat will contain
@echo off
C:\cygwin\bin\bash -li /cygdrive/c/<path-to-shell-script-location>/chmod-cmd.sh
And then, in chmod-cmd.sh you can just have the command.
chmod 777 /home/administrator/*
With this kind of setup, you can use it in MSBuild too, I should think. I use it in Ant scripts and it works for me.