Shade 'cells' in polar plot with matplotlib

Question

I\'ve got a bunch of regularly distributed points (θ = n*π/6, r=1...8), each having a value in [0, 1]. I can plot them with their values in matplotlib using

Answer 1

Sure! Just use pcolormesh on a polar axes.

E.g.

import matplotlib.pyplot as plt
import numpy as np

# Generate some data...
# Note that all of these are _2D_ arrays, so that we can use meshgrid
# You'll need to "grid" your data to use pcolormesh if it's un-ordered points
theta, r = np.mgrid[0:2*np.pi:20j, 0:1:10j]
z = np.random.random(theta.size).reshape(theta.shape)


fig, (ax1, ax2) = plt.subplots(ncols=2, subplot_kw=dict(projection='polar'))


ax1.scatter(theta.flatten(), r.flatten(), c=z.flatten())
ax1.set_title('Scattered Points')

ax2.pcolormesh(theta, r, z)
ax2.set_title('Cells')

for ax in [ax1, ax2]:
    ax.set_ylim([0, 1])
    ax.set_yticklabels([])

plt.show()

If your data isn't already on a regular grid, then you'll need to grid it to use pcolormesh.

It looks like it's on a regular grid from your plot, though. In that case, gridding it is quite simple. If it's already ordered, it may be as simple as calling reshape. Otherwise, a simple loop or exploiting numpy.histogram2d with your z values as weights will do what you need.

Answer 2

This can be done quite nicely by treating it as a polar stacked barchart:

import matplotlib.pyplot as plt
import numpy as np
from random import choice

fig = plt.figure()
ax = fig.add_axes([0.1, 0.1, 0.8, 0.8], polar=True)

for i in xrange(12*8):
    color = choice(['navy','maroon','lightgreen'])
    ax.bar(i * 2 * np.pi / 12, 1, width=2 * np.pi / 12, bottom=i / 12,
           color=color, edgecolor = color)
plt.ylim(0,10)
ax.set_yticks([])
plt.show()

Produces:

Answer 3

Well, it's fairly unpolished overall, but here's a version that rounds out the sections.

from matplotlib.pylab import *
ax = subplot(111, projection='polar')

# starts grid and colors
th = array([pi/6 * n for n in range(13)]) # so n = 0..12, allowing for full wrapping
r = array(range(9)) # r = 0..8
c = array([[random_integers(0, 10)/10 for y in range(th.size)] for x in range(r.size)])

# The smoothing
TH = cbook.simple_linear_interpolation(th, 10)

# Properly padding out C so the colors go with the right sectors (can't remember the proper word for such segments of wedges)
# A much more elegant version could probably be created using stuff from itertools or functools
C = zeros((r.size, TH.size))
oldfill = 0
TH_ = TH.tolist()

for i in range(th.size):
    fillto = TH_.index(th[i])

    for j, x in enumerate(c[:,i]):
        C[j, oldfill:fillto].fill(x)

    oldfill = fillto

# The plotting
th, r = meshgrid(TH, r)
ax.pcolormesh(th, r, C)
show()