How can I delete some columns from a tab separated fields file with awk
?
c1 c2 c3 ..... c60
For example, delete columns be
This is what the cut
command is for:
cut -f1,2,30- inputfile
The default is tab. You can change that with the -d
switch.
You can loop over all columns and filter out the ones you don't want:
awk '{for (i=1; i<=NF; i++) if (i<3 || i>29) printf $i " "; print""}' input.txt
where the NF
gives you the total number of fields in a record.
For each column that meets the condition we print the column followed by a space " "
.
EDIT: updated after remark from johnny:
awk -F 'FS' 'BEGIN{FS="\t"}{for (i=1; i<=NF-1; i++) if(i<3 || i>5) {printf $i FS};{print $NF}}' input.txt
this is improved in 2 ways:
awk '{for(z=3;z<=15;z++)$z="";$0=$0;$1=$1}1'
Input
c1 c2 c3 c4 c5 c6 c7 c8 c9 c10 c11 c12 c13 c14 c15 c16 c17 c18 c19 c20 c21
Output
c1 c2 c16 c17 c18 c19 c20 c21
Perl 'splice' solution which does not add leading or trailing whitespace:
perl -lane 'splice @F,3,27; print join " ",@F' file
Produces output:
c1 c2 c30 c31