I have been unsuccessfully trying to find an article or post listing functional limitations of WiX (Windows Installer XML)/WiX Toolset. After using WiX for a couple of weeks
I would add several more points, but these can hardly be called serious limitations since they all can be worked around:
Again, let me repeat that I don't consider those serious limitations. I'm very happy with what Rob and the team have done so far, and they are on a right track! :)
It's easiest for me to answer this question in terms of what is WiX missing that InstallShield has ( feature gap ).
I've used heat to extract COM fairly successfully so that's no longer a concern to me.