The documentation of Doxygen states, that I can use PHP Markdown Extra title labelling in a markdown file, but neither
# Main Page # {#mainpage}
Try the following instead to mark the title as a level 1 header:
Main Page {#mainpage}
=========
With doxygen 1.8.2, this makes the page as the index.html
page for me.
The doxygen document does state that starting a line with a single #
declares a level 1 header, but it seems to be not working for me either.
In the next release of doxygen (1.8.3) I plan to introduce a new configuration option USE_MDFILE_AS_MAINPAGE
which can be used to specify a markdown page that is to be used as the main page.
Then you can configure doxygen as follows:
INPUT = README.md other_sources
USE_MDFILE_AS_MAINPAGE = README.md
and it will work regardless of page's headings.