Arranging GGally plots with gridExtra?

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南笙
南笙 2020-12-11 23:35

I\'d like to arrange my ggpairs plots with arrangeGrob:

library(GGally)
library(gridExtra)

df <- structure(list(var1 = 1:5, var         


        
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  • 2020-12-12 00:19

    Unfortunately, I cannot see how that is possible.

    First, it's not going to work with gridExtra, since arrangeGrob operates on TableGrob objects:

    > ggplotGrob(qplot(1:100))
    stat_bin: binwidth defaulted to range/30. Use 'binwidth = x' to adjust this.
    TableGrob (6 x 5) "layout": 8 grobs
      z     cells       name                                 grob
    1 0 (1-6,1-5) background      rect[plot.background.rect.3349]
    2 3 (3-3,3-3)     axis-l absoluteGrob[GRID.absoluteGrob.3341]
    3 1 (4-4,3-3)     spacer                       zeroGrob[NULL]
    4 2 (3-3,4-4)      panel               gTree[GRID.gTree.3329]
    5 4 (4-4,4-4)     axis-b absoluteGrob[GRID.absoluteGrob.3335]
    6 5 (5-5,4-4)       xlab         text[axis.title.x.text.3343]
    7 6 (3-3,2-2)       ylab         text[axis.title.y.text.3345]
    8 7 (2-2,4-4)      title           text[plot.title.text.3347]
    

    The inner representation of ggpairs object only contains methods to be called, not actual grobs:

    > str(p1$plots)
    List of 9
     $ : chr "ggally_diagAxis(ggally_data, ggplot2::aes(x = var1))"
     $ : chr "ggally_cor(ggally_data, ggplot2::aes(x = var2, y = var1))"
     $ : chr "ggally_cor(ggally_data, ggplot2::aes(x = var3, y = var1))"
     $ : chr "ggally_points(ggally_data, ggplot2::aes(x = var1, y = var2))"
     $ : chr "ggally_diagAxis(ggally_data, ggplot2::aes(x = var2))"
     $ : chr "ggally_cor(ggally_data, ggplot2::aes(x = var3, y = var2))"
     $ : chr "ggally_points(ggally_data, ggplot2::aes(x = var1, y = var3))"
     $ : chr "ggally_points(ggally_data, ggplot2::aes(x = var2, y = var3))"
     $ : chr "ggally_diagAxis(ggally_data, ggplot2::aes(x = var3))"
    

    The whole work of constructing actual grobs is done by GGally:::print.ggpairs. Take a look at the source code and you will see grid.newpage() along with multiple popViewports and pushViewports. This means that even low-level grid approach (e.g. described here) is not applicable, since your grid constructions will get overwritten by GGally:::print.ggpairs.

    There's always a way, of course. Modifying the source code is always an option, though I believe it's a long and difficult path for your task. I'd be happy to be proven wrong if anyone can come up with a simple workaround.

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  • 2020-12-12 00:22
    library(GGally)
    library(gridExtra)
    library(grid)
    
    # reproducing initial data
    df <- structure(list(var1 = 1:5, var2 = 4:8, var3 = 6:10), 
                    .Names = c("var1", "var2", "var3"), 
                    row.names = c(NA, -5L), class = "data.frame")
    p1 <- ggpairs(df, 1:3) 
    p2 <- ggpairs(df, 1:2)
    
    # declaring new method for drawing ggmatrix objects using grid.draw
    grid.draw.ggmatrix <- function(x, recording = T) print(x, gridNewPage = F)
    # then making them look like grob objects
    attributes(p1)$class <- c(attributes(p1)$class, "grob")
    attributes(p2)$class <- c(attributes(p2)$class, "grob")
    
    p <- arrangeGrob(p1, p2, ncol=2)
    grid.newpage()
    grid.draw(p)
    

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