I am using MySQL Workbench 6.3.7 build 1199 CE (64 bits) on a Mac with OS X Yosemite 10.10.5. I am connecting to an Amazon RDS MySQL instance.
When I enter a simple
UPDATE 3: The problem is fixed for MacOS HighSierra in MySQL Workbench 6.3.10.
UPDATE 2: It looks like the bug is recurring again in MacOS HighSierra. See https://bugs.mysql.com/bug.php?id=83658 for more details.
There is an unofficial build that fixes the problem. You can download it at: https://drive.google.com/drive/folders/0B2fTesDcrHzVRGVFWEdILWpuaEE?usp=sharing
The build was created by Bob Davenport. See https://bugs.mysql.com/bug.php?id=87714 for more details.
UPDATE: The bug is fixed in MySQL Workbench 6.3.9.
----------------------- original answer -----------------------
It is a known MySQL bug: http://bugs.mysql.com/bug.php?id=83658 caused by GateKeeper Path Randomisation introduced in MacOS Sierra. See https://weblog.rogueamoeba.com/2016/06/29/sierra-and-gatekeeper-path-randomization/.
A possible workaround is to remove the Quarantine ACL:
xattr -dr com.apple.quarantine "/Applications/MySQLWorkbench.app"
The spinning wheel of death is due to the new feature introduced in the Sierra update called "Gatekeeper Path Randomization".
Follow the instructions:
Credits: http://cordobo.com/2398-mysql-workbench-6-3-macos-sierra-hangs-on-simple-queries/
In my case, the IP address changed where mySQL was served. Flushing the DNS fixed it for me:
sudo dscacheutil -flushcache;
sudo killall -HUP mDNSResponder;
say cache flushed
This is still an open bug in 6.3.8: https://bugs.mysql.com/bug.php?id=82231
The possible workaround is to open secondary tab with the same connection and work in there. However it crashes anyway from time to time.
Until the bug is fixed I use free Mysql Workbench aleternative for common work. For mac users I would suggest https://sequelpro.com.
In my case, it was changing the connection->ssl->Use SSL setting from "If available" to "No". Workbench 6.3.8 on OSX 10.12.1 now works for me.
To resolve this issue, I downgraded MySQL Workbench to 6.1. Now I am able to run my query and it doesn't hang.