Shell script read missing last line

Question

I have an ... odd issue with a bash shell script that I was hoping to get some insight on.

My team is working on a script that iterates through lines in a file and

Answer 1

As a workaround, before reading from the text file a newline can be appended to the file.

echo "\n" >> $file_path

This will ensure that all the lines that was previously in the file will be read.

Answer 2

Use sed to match the last line of a file, which it will then append a newline if one does not exist and have it do an inline replacement of the file:

sed -i '' -e '$a\' file

The code is from this stackexchange link

Note: I have added empty single quotes to -i '' because, at least in OS X, -i was using -e as a file extension for the backup file. I would have gladly commented on the original post but lacked 50 points. Perhaps this will gain me a few in this thread, thanks.

Answer 3

According to the POSIX spec for the read command, it should return a nonzero status if "End-of-file was detected or an error occurred." Since EOF is detected as it reads the last "line", it sets $line and then returns an error status, and the error status prevents the loop from executing on that last "line". The solution is easy: make the loop execute if the read command succeeds OR if anything was read into $line.

while read line || [ -n "$line" ]; do

Answer 4

I tested this in command line

# create dummy file. last line doesn't end with newline
printf "%i\n%i\nNo-newline-here" >testing

Test with your first form (piping to while-loop)

cat testing | while read line; do echo $line; done

This misses the last line, which makes sense since read only gets input that ends with a newline.

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Test with your second form (command substitution)

for line in `cat testbed1` ; do echo $line; done

This gets the last line as well

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read only gets input if it's terminated by newline, that's why you miss the last line.

On the other hand, in the second form

`cat testing` 

expands to the form of

line1\nline2\n...lineM 

which is separated by the shell into multiple fields using IFS, so you get

line1 line2 line3 ... lineM 

That's why you still get the last line.

p/s: What I don't understand is how you get the first form working...

Answer 5

The C standard says that text files must end with a newline or the data after the last newline may not be read properly.

ISO/IEC 9899:2011 §7.21.2 Streams

A text stream is an ordered sequence of characters composed into lines, each line consisting of zero or more characters plus a terminating new-line character. Whether the last line requires a terminating new-line character is implementation-defined. Characters may have to be added, altered, or deleted on input and output to conform to differing conventions for representing text in the host environment. Thus, there need not be a one-to- one correspondence between the characters in a stream and those in the external representation. Data read in from a text stream will necessarily compare equal to the data that were earlier written out to that stream only if: the data consist only of printing characters and the control characters horizontal tab and new-line; no new-line character is immediately preceded by space characters; and the last character is a new-line character. Whether space characters that are written out immediately before a new-line character appear when read in is implementation-defined.

I would not have unexpected a missing newline at the end of file to cause trouble in bash (or any Unix shell), but that does seem to be the problem reproducibly ($ is the prompt in this output):

$ echo xxx\\c
xxx$ { echo abc; echo def; echo ghi; echo xxx\\c; } > y
$ cat y
abc
def
ghi
xxx$
$ while read line; do echo $line; done < y
abc
def
ghi
$ bash -c 'while read line; do echo $line; done < y'
abc
def
ghi
$ ksh -c 'while read line; do echo $line; done < y'
abc
def
ghi
$ zsh -c 'while read line; do echo $line; done < y'
abc
def
ghi
$ for line in $(<y); do echo $line; done      # Preferred notation in bash
abc
def
ghi
xxx
$ for line in $(cat y); do echo $line; done   # UUOC Award pending
abc
def
ghi
xxx
$

It is also not limited to bash — Korn shell (ksh) and zsh behave like that too. I live, I learn; thanks for raising the issue.

As demonstrated in the code above, the cat command reads the whole file. The for line in `cat $DATAFILE` technique collects all the output and replaces arbitrary sequences of white space with a single blank (I conclude that each line in the file contains no blanks).

Tested on Mac OS X 10.7.5.

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What does POSIX say?

The POSIX read command specification says:

The read utility shall read a single line from standard input.

By default, unless the -r option is specified, <backslash> shall act as an escape character. An unescaped <backslash> shall preserve the literal value of the following character, with the exception of a <newline>. If a <newline> follows the <backslash>, the read utility shall interpret this as line continuation. The <backslash> and <newline> shall be removed before splitting the input into fields. All other unescaped <backslash> characters shall be removed after splitting the input into fields.

If standard input is a terminal device and the invoking shell is interactive, read shall prompt for a continuation line when it reads an input line ending with a <backslash> <newline>, unless the -r option is specified.

The terminating <newline> (if any) shall be removed from the input and the results shall be split into fields as in the shell for the results of parameter expansion (see Field Splitting); [...]

Note that '(if any)' (emphasis added in quote)! It seems to me that if there is no newline, it should still read the result. On the other hand, it also says:

STDIN

The standard input shall be a text file.

and then you get back to the debate about whether a file that does not end with a newline is a text file or not.

However, the rationale on the same page documents:

Although the standard input is required to be a text file, and therefore will always end with a <newline> (unless it is an empty file), the processing of continuation lines when the -r option is not used can result in the input not ending with a <newline>. This occurs if the last line of the input file ends with a <backslash> <newline>. It is for this reason that "if any" is used in "The terminating <newline> (if any) shall be removed from the input" in the description. It is not a relaxation of the requirement for standard input to be a text file.

That rationale must mean that the text file is supposed to end with a newline.

The POSIX definition of a text file is:

3.395 Text File

A file that contains characters organized into zero or more lines. The lines do not contain NUL characters and none can exceed {LINE_MAX} bytes in length, including the <newline> character. Although POSIX.1-2008 does not distinguish between text files and binary files (see the ISO C standard), many utilities only produce predictable or meaningful output when operating on text files. The standard utilities that have such restrictions always specify "text files" in their STDIN or INPUT FILES sections.

This does not stipulate 'ends with a <newline>' directly, but does defer to the C standard.

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A solution to the 'no terminal newline' problem

Note Gordon Davisson's answer. A simple test shows that his observation is accurate:

$ while read line; do echo $line; done < y; echo $line
abc
def
ghi
xxx
$

Therefore, his technique of:

while read line || [ -n "$line" ]; do echo $line; done < y

or:

cat y | while read line || [ -n "$line" ]; do echo $line; done

will work for files without a newline at the end (at least on my machine).

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I'm still surprised to find that the shells drop the last segment (it can't be called a line because it doesn't end with a newline) of the input, but there might be sufficient justification in POSIX to do so. And clearly it is best to ensure that your text files really are text files ending with a newline.

Answer 6

I had a similar issue. I was doing a cat of a file, piping it to a sort and then piping the result to a 'while read var1 var2 var3'. ie: cat $FILE|sort -k3|while read Count IP Name do The work under the "do" was an if statement that identified changing data in the $Name field and based on change or no change did sums of $Count or printed the summed line to the report. I also ran into the issue where I couldnt get the last line to print to the report. I went with the simple expedient of redirecting the cat/sort to a new file, echoing a newline to that new file and THEN ran my "while read Count IP Name" on the new file with successful results. ie: cat $FILE|sort -k3 > NEWFILE echo "\n" >> NEWFILE cat NEWFILE |while read Count IP Name do Sometimes the simple, inelegant is the best way to go.