In the following code, I want to calculate the percent of G and C characters in a sequence. In Python 3 I correctly get 0.5
, but on Python 2 I get 0
For Python2 /
is integer division when the numerator and denominator are both int
, you need to make sure to force floating point division
eg.
return (seq.count('G') + seq.count('C')) / float(len(seq))
alternatively, you can put
from __future__ import division
at the top of the file
In python2.x /
performs integers division.
>>> 3/2
1
To get desired result you can change either one of the operands to a float using float()
:
>>> 3/2. #3/2.0
1.5
>>> 3/float(2)
1.5
or use division
from __future__
:
>>> from __future__ import division
>>> 3/2
1.5
/
is a different operator in Python 3; in Python 2 /
alters behaviour when applied to 2 integer operands and returns the result of a floor-division instead:
>>> 3/2 # two integer operands
1
>>> 3/2.0 # one operand is not an integer, float division is used
1.5
Add:
from __future__ import division
to the top of your code to make /
use float division in Python 2, or use //
to force Python 3 to use integer division:
>>> from __future__ import division
>>> 3/2 # even when using integers, true division is used
1.5
>>> 3//2.0 # explicit floor division
1.0
Using either of these techniques works in Python 2.2 or newer. See PEP 238 for the nitty-gritty details of why this was changed.