How to add column to numpy array

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北海茫月
北海茫月 2020-12-02 14:09

I am trying to add one column to the array created from recfromcsv. In this case it\'s an array: [210,8] (rows, cols).

I want to add a nint

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  • 2020-12-02 14:56

    I add a new column with ones to a matrix array in this way:

    Z = append([[1 for _ in range(0,len(Z))]], Z.T,0).T
    

    Maybe it is not that efficient?

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  • 2020-12-02 14:56

    It can be done like this:

    import numpy as np
    
    # create a random matrix:
    A = np.random.normal(size=(5,2))
    
    # add a column of zeros to it:
    print(np.hstack((A,np.zeros((A.shape[0],1)))))
    

    In general, if A is an m*n matrix, and you need to add a column, you have to create an n*1 matrix of zeros, then use "hstack" to add the matrix of zeros to the right of the matrix A.

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  • 2020-12-02 15:02

    I think that your problem is that you are expecting np.append to add the column in-place, but what it does, because of how numpy data is stored, is create a copy of the joined arrays

    Returns
    -------
    append : ndarray
        A copy of `arr` with `values` appended to `axis`.  Note that `append`
        does not occur in-place: a new array is allocated and filled.  If
        `axis` is None, `out` is a flattened array.
    

    so you need to save the output all_data = np.append(...):

    my_data = np.random.random((210,8)) #recfromcsv('LIAB.ST.csv', delimiter='\t')
    new_col = my_data.sum(1)[...,None] # None keeps (n, 1) shape
    new_col.shape
    #(210,1)
    all_data = np.append(my_data, new_col, 1)
    all_data.shape
    #(210,9)
    

    Alternative ways:

    all_data = np.hstack((my_data, new_col))
    #or
    all_data = np.concatenate((my_data, new_col), 1)
    

    I believe that the only difference between these three functions (as well as np.vstack) are their default behaviors for when axis is unspecified:

    • concatenate assumes axis = 0
    • hstack assumes axis = 1 unless inputs are 1d, then axis = 0
    • vstack assumes axis = 0 after adding an axis if inputs are 1d
    • append flattens array

    Based on your comment, and looking more closely at your example code, I now believe that what you are probably looking to do is add a field to a record array. You imported both genfromtxt which returns a structured array and recfromcsv which returns the subtly different record array (recarray). You used the recfromcsv so right now my_data is actually a recarray, which means that most likely my_data.shape = (210,) since recarrays are 1d arrays of records, where each record is a tuple with the given dtype.

    So you could try this:

    import numpy as np
    from numpy.lib.recfunctions import append_fields
    x = np.random.random(10)
    y = np.random.random(10)
    z = np.random.random(10)
    data = np.array( list(zip(x,y,z)), dtype=[('x',float),('y',float),('z',float)])
    data = np.recarray(data.shape, data.dtype, buf=data)
    data.shape
    #(10,)
    tot = data['x'] + data['y'] + data['z'] # sum(axis=1) won't work on recarray
    tot.shape
    #(10,)
    all_data = append_fields(data, 'total', tot, usemask=False)
    all_data
    #array([(0.4374783740738456 , 0.04307289878861764, 0.021176067323686598, 0.5017273401861498),
    #       (0.07622262416466963, 0.3962146058689695 , 0.27912715826653534 , 0.7515643883001745),
    #       (0.30878532523061153, 0.8553768789387086 , 0.9577415585116588  , 2.121903762680979 ),
    #       (0.5288343561208022 , 0.17048864443625933, 0.07915689716226904 , 0.7784798977193306),
    #       (0.8804269791375121 , 0.45517504750917714, 0.1601389248542675  , 1.4957409515009568),
    #       (0.9556552723429782 , 0.8884504475901043 , 0.6412854758843308  , 2.4853911958174133),
    #       (0.0227638618687922 , 0.9295332854783015 , 0.3234597575660103  , 1.275756904913104 ),
    #       (0.684075052174589  , 0.6654774682866273 , 0.5246593820025259  , 1.8742119024637423),
    #       (0.9841793718333871 , 0.5813955915551511 , 0.39577520705133684 , 1.961350170439875 ),
    #       (0.9889343795296571 , 0.22830104497714432, 0.20011292764078448 , 1.4173483521475858)], 
    #      dtype=[('x', '<f8'), ('y', '<f8'), ('z', '<f8'), ('total', '<f8')])
    all_data.shape
    #(10,)
    all_data.dtype.names
    #('x', 'y', 'z', 'total')
    
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  • 2020-12-02 15:04

    If you have an array, a of say 210 rows by 8 columns:

    a = numpy.empty([210,8])
    

    and want to add a ninth column of zeros you can do this:

    b = numpy.append(a,numpy.zeros([len(a),1]),1)
    
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